Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

17580388 .. 17580945

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG101700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCAACATTTCCTGGATTTGCAGGACAACCCGACCCATTTCGCTGACCCGAAATGGGAATCCAACTCGTCTCCGACTCACCACCACTTGACTCAGTCCTCCTCCGCCGCCAACGCCAACGCCAACCTCGACCGCGTCCTCTTCCAAGACCTCGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCCAGCAGCTCATTCATGTGCCGCGGTTCGGTCACCTACACCAAGACGCCTTCCAGAGACTCCTTATCCAAAAAAGTAAGATTTTTT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.63

Weight (kDa)

7.98

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	135, 219
AciI	CCGC	5 cut(s)	105, 108, 133, 217, 219
AcyI	GRCGYC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	55, 223
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	75, 246
ApeKI	GCWGC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	71, 220
BbvI	GCAGC	1 cut(s)	213
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	75, 246
BisI	GCNGC	3 cut(s)	108, 202, 217
BlsI	GCNGC	3 cut(s)	109, 203, 218
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 223
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	2 cut(s)	55, 223
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	135, 219
Bsh1285I	CGRYCG	2 cut(s)	133, 190
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	2 cut(s)	133, 190
BslFI	GGGAC	2 cut(s)	149, 163
BslI	CCNNNNNNNGG	2 cut(s)	55, 223
BsmAI	GTCTC	2 cut(s)	75, 246
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	149, 163
Bsp143I	GATC	2 cut(s)	159, 187
BspACI	CCGC	5 cut(s)	105, 108, 133, 217, 219
BspCNI	CTCAG	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	135, 219
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	159, 187
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	217
BstEII	GGTNACC	1 cut(s)	226
BstFNI	CGCG	2 cut(s)	135, 219
BstKTI	GATC	2 cut(s)	162, 190
BstMAI	GTCTC	2 cut(s)	75, 246
BstMBI	GATC	2 cut(s)	159, 187
BstMCI	CGRYCG	2 cut(s)	133, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	14
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	135, 219
BstV1I	GCAGC	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	199
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	124, 250
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	2 cut(s)	197, 204
CviKI_1	RGCY	2 cut(s)	197, 204
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	161, 189
DpnII	GATC	2 cut(s)	159, 187
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	94
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	214
FaiI	YATR	1 cut(s)	212
FaqI	GGGAC	2 cut(s)	149, 163
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	108, 202, 217
Fsp4HI	GCNGC	3 cut(s)	108, 202, 217
GluI	GCNGC	3 cut(s)	108, 202, 217
HgaI	GACGC	2 cut(s)	124, 250
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	214
HinfI	GANTC	4 cut(s)	59, 76, 91, 254
HphI	GGTGA	2 cut(s)	71, 220
Hpy188I	TCNGA	2 cut(s)	75, 192
Hpy188III	TCNNGA	2 cut(s)	157, 249
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	4, 22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	214
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	159, 187
LpnPI	CCDG	5 cut(s)	8, 26, 188, 211, 262
Lsp1109I	GCAGC	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	161, 189
MboI	GATC	2 cut(s)	159, 187
MboII	GAAGA	1 cut(s)	133
MlyI	GAGTC	3 cut(s)	70, 85, 248
MmeI	TCCRAC	2 cut(s)	87, 98
MnlI	CCTC	7 cut(s)	109, 112, 137, 149, 161, 177, 191
MslI	CAYNNNNRTG	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	2 cut(s)	135, 219
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	159, 187
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 159, 168
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	3 cut(s)	94, 134, 152
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	109, 203, 218
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	3 cut(s)	70, 85, 248
PpsI	GAGTC	3 cut(s)	70, 85, 248
Psp6I	CCWGG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	12
PsyI	GACNNNGTC	3 cut(s)	94, 134, 152
PvuI	CGATCG	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	211
SacII	CCGCGG	1 cut(s)	220
SatI	GCNGC	3 cut(s)	108, 202, 217
Sau3AI	GATC	2 cut(s)	159, 187
SchI	GAGTC	3 cut(s)	70, 85, 248
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	4 cut(s)	129, 153, 206, 233
Sfr303I	CCGCGG	1 cut(s)	220
SgrBI	CCGCGG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	211
SsiI	CCGC	5 cut(s)	105, 108, 133, 217, 219
StyD4I	CCNGG	1 cut(s)	12
TaqI	TCGA	3 cut(s)	129, 156, 186
TaqII	GACCGA	1 cut(s)	214
TauI	GCSGC	2 cut(s)	110, 219
TfiI	GAWTC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	199
Tth111I	GACNNNGTC	3 cut(s)	94, 134, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.