Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Forward (+)

62893532 .. 62895569

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCAGCATTTCCTGGATTTGCAGGACAACCCGACCCATTTCGCTGACCCGAAATGGGAATCCAACTCGTCTCCGACTCACCACCACCTGGCTCAGTCCTCCTCCGCCGCCAACGCCAACGCCAACGCCAACGCCAACCTCGACCGCGTCCTCTTCCAAGACCTCGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCCAGCAGCTCATTCACGCGCCGCGGTTCGGTCACCTACACCAAGACGCCTTCCAGAGAATCCTTATACAAAAAGGTGCCGAACAGGAATGGGGCTCAATCCATGCCGGCAAGAAAGAAGAGGGAGAGTGCTAGCAATAACCCGGATGCTGACAGCGTTTTAAGTTTTTCCTCAAGGACTTCGGCGGCAGAAAAGGACGACGAAGAGTTGGATGCGTTAAGGGTTCAGTTGGAGGATCTGCAGAGGAAATTGTTGGAGAAAGATGAACTTTTGAAGTCGTCGGATATCTCAAAGAACGAAGTGAGTGCTGTTCAAGCAAAACTAGAGGAACTGAAGCGCCAAGCTGCGCAAAAGGATTCTGTAATCAAGGCTTCTCAGCTACAACTATCTGATGCAAAGATCAAGCTTGCAGACAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGCTATGACATCAAACAAGAGTGCAGAAAAGCTCCAAGGAGAGCTAGACTCTTTGCGAGGAGACATTTCCACAATTATGATCCTATTCGAAGGCTTGGTGAAAACTGATTCTACTGCATCCGCTGAAGATTATGATATTTCACCTTTTACTGTGGATCATCTTCCATATATTGACGATTGGGATGAGTCGCAGATGCAGAGAATGGAAGCTGCTAGAAAAGCTTACGAAGCTGCTGTTGTTGCTGCAAAAGAAAGGCAAGATGAAGAATCTATTGCTGCTGCAGCCAATGCAAGGTTACATCTTCAATCGTTTGTTTTGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

36.27

Weight (kDa)

5.42

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	3 cut(s)	147, 226, 231
AciI	CCGC	7 cut(s)	105, 108, 145, 229, 231, 392, 774
AclWI	GGATC	3 cut(s)	450, 727, 816
AcuI	CTGAAG	2 cut(s)	560, 798
AcyI	GRCGYC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	55, 88, 235, 945
AgsI	TTSAA	4 cut(s)	481, 521, 959, 973
AjnI	CCWGG	2 cut(s)	12, 87
Alw26I	GTCTC	2 cut(s)	75, 708
AlwI	GGATC	3 cut(s)	450, 727, 816
AspLEI	GCGC	3 cut(s)	228, 546, 556
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	71, 232, 763, 786
AsuII	TTCGAA	1 cut(s)	741
AsuNHI	GCTAGC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	14, 89
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	75, 708
BfaI	CTAG	4 cut(s)	339, 530, 698, 867
BfmI	CTRYAG	2 cut(s)	446, 933
BfoI	RGCGCY	1 cut(s)	547
Bme1390I	CCNGG	3 cut(s)	14, 89, 350
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	3 cut(s)	14, 89, 350
BmsI	GCATC	5 cut(s)	343, 409, 589, 779, 837
BmtI	GCTAGC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	686, 718
Bpu14I	TTCGAA	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	229, 688
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 88, 235, 945
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	14, 89
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	229, 688
BseGI	GGATG	4 cut(s)	358, 424, 770, 841
BseLI	CCNNNNNNNGG	4 cut(s)	55, 88, 235, 945
BseMII	CTCAG	2 cut(s)	107, 596
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	91, 726
BsgI	GTGCAG	1 cut(s)	696
Bsh1236I	CGCG	3 cut(s)	147, 226, 231
Bsh1285I	CGRYCG	2 cut(s)	145, 202
BshNI	GGYRCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	198
BsiEI	CGRYCG	2 cut(s)	145, 202
BsiSI	CCGG	2 cut(s)	314, 350
BslFI	GGGAC	2 cut(s)	161, 175
BslI	CCNNNNNNNGG	4 cut(s)	55, 88, 235, 945
BsmAI	GTCTC	2 cut(s)	75, 708
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	161, 175
Bsp119I	TTCGAA	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
BspACI	CCGC	7 cut(s)	105, 108, 145, 229, 231, 392, 774
BspCNI	CTCAG	2 cut(s)	106, 595
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	3 cut(s)	147, 226, 231
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	2 cut(s)	450, 937
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	3 cut(s)	450, 727, 816
BspT104I	TTCGAA	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	229, 688
BssMI	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	2 cut(s)	14, 89
Bst4CI	ACNGT	2 cut(s)	648, 805
Bst6I	CTCTTC	3 cut(s)	158, 320, 405
BstACI	GRCGYC	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	941
BstBI	TTCGAA	1 cut(s)	741
BstC8I	GCNNGC	5 cut(s)	211, 315, 340, 615, 627
BstDEI	CTNAG	2 cut(s)	93, 582
BstDSI	CCRYGG	1 cut(s)	229
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	358, 424, 770, 841
BstFNI	CGCG	3 cut(s)	147, 226, 231
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	3 cut(s)	228, 546, 556
BstKTI	GATC	6 cut(s)	174, 202, 445, 609, 735, 811
BstMAI	GTCTC	2 cut(s)	75, 708
BstMBI	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
BstMCI	CGRYCG	2 cut(s)	145, 202
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 521, 872, 881, 893, 935, 941
BstNI	CCWGG	2 cut(s)	14, 89
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	3 cut(s)	12, 87, 348
BstSFI	CTRYAG	2 cut(s)	446, 933
BstUI	CGCG	3 cut(s)	147, 226, 231
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	358, 424, 770, 841
BtsIMutI	CAGTG	1 cut(s)	653
Cac8I	GCNNGC	5 cut(s)	211, 315, 340, 615, 627
CfoI	GCGC	3 cut(s)	228, 546, 556
Cfr10I	RCCGGY	1 cut(s)	313
Cfr42I	CCGCGG	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	2 cut(s)	136, 262
CviAII	CATG	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	93, 582
DpnI	GATC	6 cut(s)	173, 201, 444, 608, 734, 810
DpnII	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
Eam1104I	CTCTTC	3 cut(s)	158, 320, 405
EarI	CTCTTC	3 cut(s)	158, 320, 405
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	688
Eco24I	GRGCYC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	493
Eco57I	CTGAAG	2 cut(s)	560, 798
Eco91I	GGTNACC	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	12, 87
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	313
FaiI	YATR	7 cut(s)	274, 311, 659, 731, 786, 820, 822
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	2 cut(s)	161, 175
FatI	CATG	1 cut(s)	309
FokI	GGATG	4 cut(s)	365, 431, 757, 848
FriOI	GRGCYC	1 cut(s)	304
FspBI	CTAG	4 cut(s)	339, 530, 698, 867
FspI	TGCGCA	1 cut(s)	555
GlaI	GCGC	3 cut(s)	227, 545, 555
HaeII	RGCGCY	1 cut(s)	547
HapII	CCGG	2 cut(s)	314, 350
HgaI	GACGC	2 cut(s)	136, 262
HhaI	GCGC	3 cut(s)	228, 546, 556
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	3 cut(s)	226, 544, 554
HinP1I	GCGC	3 cut(s)	226, 544, 554
HindIII	AAGCTT	2 cut(s)	611, 873
HinfI	GANTC	8 cut(s)	59, 76, 266, 563, 701, 761, 839, 920
HpaII	CCGG	2 cut(s)	314, 350
HphI	GGTGA	4 cut(s)	71, 232, 763, 786
Hpy188I	TCNGA	4 cut(s)	75, 204, 490, 598
Hpy188III	TCNNGA	2 cut(s)	169, 261
Hpy99I	CGWCG	3 cut(s)	170, 410, 490
HpyAV	CCTTC	2 cut(s)	267, 737
HpyCH4III	ACNGT	2 cut(s)	648, 805
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 521, 872, 881, 893, 935, 941
HpyF3I	CTNAG	2 cut(s)	93, 582
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	3 cut(s)	226, 544, 554
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
LmnI	GCTCC	1 cut(s)	690
LweI	GCATC	5 cut(s)	343, 409, 589, 779, 837
MaeI	CTAG	4 cut(s)	339, 530, 698, 867
MaeIII	GTNAC	3 cut(s)	238, 642, 948
MalI	GATC	6 cut(s)	173, 201, 444, 608, 734, 810
MboI	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
MboII	GAAGA	7 cut(s)	145, 337, 422, 791, 806, 929, 947
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	2 cut(s)	455, 726
MlyI	GAGTC	3 cut(s)	70, 695, 848
MmeI	TCCRAC	6 cut(s)	87, 98, 396, 417, 441, 468
MroNI	GCCGGC	1 cut(s)	313
MseI	TTAA	2 cut(s)	368, 425
MslI	CAYNNNNRTG	1 cut(s)	728
MspA1I	CMGCKG	2 cut(s)	231, 776
MspI	CCGG	2 cut(s)	314, 350
MspR9I	CCNGG	3 cut(s)	14, 89, 350
MvaI	CCWGG	2 cut(s)	14, 89
MvnI	CGCG	3 cut(s)	147, 226, 231
MwoI	GCNNNNNNNGC	7 cut(s)	113, 521, 872, 881, 893, 935, 941
NaeI	GCCGGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
NgoMIV	GCCGGC	1 cut(s)	313
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	555
NspV	TTCGAA	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	3 cut(s)	138, 171, 180
PdiI	GCCGGC	1 cut(s)	315
PfeI	GAWTC	5 cut(s)	59, 266, 563, 761, 920
PflFI	GACNNNGTC	2 cut(s)	146, 164
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	12
Ple19I	CGATCG	1 cut(s)	202
PleI	GAGTC	3 cut(s)	70, 695, 847
PpsI	GAGTC	3 cut(s)	70, 695, 847
Psp6I	CCWGG	2 cut(s)	12, 87
PspEI	GGTNACC	1 cut(s)	238
PspGI	CCWGG	2 cut(s)	12, 87
PspN4I	GGNNCC	1 cut(s)	285
PstI	CTGCAG	2 cut(s)	450, 937
PsuI	RGATCY	1 cut(s)	442
PsyI	GACNNNGTC	2 cut(s)	146, 164
PvuI	CGATCG	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	728
SacII	CCGCGG	1 cut(s)	232
SaqAI	TTAA	2 cut(s)	368, 425
Sau3AI	GATC	6 cut(s)	171, 199, 442, 606, 732, 808
SchI	GAGTC	3 cut(s)	70, 695, 848
ScrFI	CCNGG	3 cut(s)	14, 89, 350
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	5 cut(s)	343, 409, 589, 779, 837
SfcI	CTRYAG	2 cut(s)	446, 933
Sfr303I	CCGCGG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	741
SgrBI	CCGCGG	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	2 cut(s)	455, 726
SsiI	CCGC	7 cut(s)	105, 108, 145, 229, 231, 392, 774
SspMI	CTAG	4 cut(s)	339, 530, 698, 867
StyD4I	CCNGG	3 cut(s)	12, 87, 348
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	2 cut(s)	648, 805
TaqI	TCGA	4 cut(s)	141, 168, 198, 741
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	455, 726
TauI	GCSGC	3 cut(s)	110, 231, 395
TfiI	GAWTC	5 cut(s)	59, 266, 563, 761, 920
Tru1I	TTAA	2 cut(s)	368, 425
Tru9I	TTAA	2 cut(s)	368, 425
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	486, 930
TspRI	CASTG	1 cut(s)	653
Tth111I	GACNNNGTC	2 cut(s)	146, 164
Van91I	CCANNNNNTGG	1 cut(s)	88
XspI	CTAG	4 cut(s)	339, 530, 698, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.