Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7992950.1

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 366

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7992950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgcagcacttactggatttgcaggaaaaccggacccatttcgctgacccgaaatgggaatccaactcgtctccgactcaccaccacctgactcagtcctccaacgccaacgccaacgccaacgccaacctcgaccgcgtcctcttccaagacctcgtcgagatcgtcccgctcgtccagtccctcatcgatcggaaagccagcagctcattcacgcgccgcggttcggtcacctacaccaagacgccttccagagactccttatccaaaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.29

Weight (kDa)

9.3

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	172
AccII	CGCG	3 cut(s)	138, 217, 222
AciI	CCGC	4 cut(s)	136, 170, 220, 222
AcyI	GRCGYC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	55, 226
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	75, 249
ApeKI	GCWGC	2 cut(s)	4, 204
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	71, 223
AvaII	GGWCC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	16, 216
BcoDI	GTCTC	2 cut(s)	75, 249
BisI	GCNGC	3 cut(s)	5, 205, 220
BlsI	GCNGC	3 cut(s)	6, 206, 221
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	35
Bsa29I	ATCGAT	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 226
Bse1I	ACTGG	2 cut(s)	18, 178
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	55, 226
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	18, 178
BseXI	GCAGC	2 cut(s)	16, 216
Bsh1236I	CGCG	3 cut(s)	138, 217, 222
Bsh1285I	CGRYCG	2 cut(s)	136, 193
BshVI	ATCGAT	1 cut(s)	189
BsiEI	CGRYCG	2 cut(s)	136, 193
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	2 cut(s)	152, 166
BslI	CCNNNNNNNGG	2 cut(s)	55, 226
BsmAI	GTCTC	2 cut(s)	75, 249
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	152, 166
Bsp143I	GATC	2 cut(s)	162, 190
BspACI	CCGC	4 cut(s)	136, 170, 220, 222
BspCNI	CTCAG	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	3 cut(s)	138, 217, 222
BspLI	GGNNCC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	18, 178
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	162, 190
BssNI	GRCGYC	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	229
BstFNI	CGCG	3 cut(s)	138, 217, 222
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	165, 193
BstMAI	GTCTC	2 cut(s)	75, 249
BstMBI	GATC	2 cut(s)	162, 190
BstMCI	CGRYCG	2 cut(s)	136, 193
BstPI	GGTNACC	1 cut(s)	229
BstUI	CGCG	3 cut(s)	138, 217, 222
BstV1I	GCAGC	2 cut(s)	16, 216
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	33
Cfr42I	CCGCGG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	2 cut(s)	127, 253
CviJI	RGCY	2 cut(s)	200, 207
CviKI_1	RGCY	2 cut(s)	200, 207
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	164, 192
DpnII	GATC	2 cut(s)	162, 190
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	75
FaqI	GGGAC	2 cut(s)	152, 166
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	5, 205, 220
Fsp4HI	GCNGC	3 cut(s)	5, 205, 220
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	5, 205, 220
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	2 cut(s)	127, 253
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	59, 76, 91, 257
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	2 cut(s)	71, 223
Hpy188I	TCNGA	2 cut(s)	75, 195
Hpy188III	TCNNGA	2 cut(s)	160, 252
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	4, 22
HpyF3I	CTNAG	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	245
HspAI	GCGC	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	162, 190
LpnPI	CCDG	6 cut(s)	8, 44, 101, 191, 214, 265
Lsp1109I	GCAGC	2 cut(s)	16, 216
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	164, 192
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	2 cut(s)	162, 190
MboII	GAAGA	1 cut(s)	136
MlyI	GAGTC	3 cut(s)	70, 85, 251
MmeI	TCCRAC	3 cut(s)	87, 98, 126
MnlI	CCTC	5 cut(s)	109, 140, 152, 164, 194
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	1 cut(s)	31
MvnI	CGCG	3 cut(s)	138, 217, 222
NdeII	GATC	2 cut(s)	162, 190
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 162, 171
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	3 cut(s)	94, 137, 155
PkrI	GCNGC	3 cut(s)	6, 206, 221
Ple19I	CGATCG	1 cut(s)	193
PleI	GAGTC	3 cut(s)	70, 85, 251
PpsI	GAGTC	3 cut(s)	70, 85, 251
PspEI	GGTNACC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	33
PsyI	GACNNNGTC	3 cut(s)	94, 137, 155
PvuI	CGATCG	1 cut(s)	193
SacII	CCGCGG	1 cut(s)	223
SatI	GCNGC	3 cut(s)	5, 205, 220
Sau3AI	GATC	2 cut(s)	162, 190
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	3 cut(s)	70, 85, 251
SetI	ASST	5 cut(s)	90, 132, 156, 209, 236
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	33
SsiI	CCGC	4 cut(s)	136, 170, 220, 222
TaqI	TCGA	3 cut(s)	132, 159, 189
TaqII	GACCGA	1 cut(s)	217
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	2 cut(s)	4, 204
Tsp45I	GTSAC	1 cut(s)	229
Tth111I	GACNNNGTC	3 cut(s)	94, 137, 155
VpaK11BI	GGWCC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.