Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Forward (+)

7565996 .. 7569897

Gene Structure 3902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAGCATTTCCTGGATTTGCAAGACAACCCGACCCATTTCGGCGACCCGAAATGGGAATCCAACTCGTCCCAGCTGACTCAGTCCTCCTCCTCCGCCGCCAACGCCAACCTCGACCGCGTCCTCTTCCAGGACCTCGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCCAGCAGCTCCTTCACGCGCCGCGGCTCCGTCACCTACACCAAGACGCCTTCCAGAGAATCCTTATCCAAGAAATTGTCTAACAGGAATGGGGCGCAATCCATTCCGGCAAGAAAGAAGAGGGAGAATGCTGGTAATAACCCTGACGCTGACAGCGTTTCGAGTATTTCCTCGAGGGATTTGGCAGCGGAGAAGGAGCACGAGGAGTTGGATGCGTTGAGGGTTCAGTTTGAGGATCTGCAGAGGAAATTGTTGGAGAAAGACGAACTTTTGAAGTCGTCGGAGATCTCAAAGAAAGAAGTGAGTTCTGTTCAAGCAAAGCTTGAGGAAGTGAAGCGCCAAGCTGCGGAAAAGGATTCTTTAATCAAGGCTTCTCAGCTACAGCTATCTGATGCAAAGATCAAGCTTGCAGACAAGCAAGCTGCTCTTGAAAAGTTACAGTGGGAAGCTATGACATCAAACAAGAGTGCAGAGAAGCTCCGAGCAGAGCTAGACTCTTTGCGAGGAGATATTTCCTCATTTATGATCCTATTTGATGGCTTGGTCAAAACTGATCCCACTGCAAACACTGAAGATTATGATATTTCACCTTGTACTGTGGATCATCTTCCATATATTGAAGATTGGGATGAGACGCAGATGCAGAAAATGGAAGCTGCTAGAAAAGCTTACGAAGCTGCTGTTGTTGTTGCAAAAGAAAGGCAAGATGAAGAATCCATTGCTGCTGCAGCCAGTGCAAGGTTACATCTTCAATCGTTTGTTTTGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.41

Weight (kDa)

5.38

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	352
AccII	CGCG	3 cut(s)	120, 199, 204
AciI	CCGC	7 cut(s)	96, 99, 118, 202, 204, 368, 527
AclWI	GGATC	4 cut(s)	423, 700, 728, 789
AcuI	CTGAAG	1 cut(s)	771
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	4 cut(s)	55, 130, 526, 918
AgsI	TTSAA	6 cut(s)	454, 494, 611, 800, 932, 946
AjnI	CCWGG	2 cut(s)	12, 129
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	806
AlwI	GGATC	4 cut(s)	423, 700, 728, 789
Ama87I	CYCGRG	1 cut(s)	352
AspLEI	GCGC	3 cut(s)	201, 277, 519
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	205, 759
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	381
BccI	CCATC	1 cut(s)	710
BciT130I	CCWGG	2 cut(s)	14, 131
BcoDI	GTCTC	1 cut(s)	806
BfaI	CTAG	2 cut(s)	671, 840
BfmI	CTRYAG	3 cut(s)	419, 560, 906
BfoI	RGCGCY	1 cut(s)	520
BglII	AGATCT	1 cut(s)	465
Bme1390I	CCNGG	2 cut(s)	14, 131
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	2 cut(s)	14, 131
BmsI	GCATC	3 cut(s)	382, 562, 810
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpuEI	CTTGAG	1 cut(s)	524
Bsa29I	ATCGAT	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 130, 526, 918
Bse1I	ACTGG	2 cut(s)	160, 912
Bse3DI	GCAATG	1 cut(s)	897
BseBI	CCWGG	2 cut(s)	14, 131
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	2 cut(s)	397, 814
BseLI	CCNNNNNNNGG	4 cut(s)	55, 130, 526, 918
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	2 cut(s)	95, 569
BseNI	ACTGG	2 cut(s)	160, 912
BseRI	GAGGAG	4 cut(s)	79, 82, 398, 699
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	3 cut(s)	120, 199, 204
Bsh1285I	CGRYCG	2 cut(s)	118, 175
BshVI	ATCGAT	1 cut(s)	171
BsiEI	CGRYCG	2 cut(s)	118, 175
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	3 cut(s)	55, 134, 148
BslI	CCNNNNNNNGG	4 cut(s)	55, 130, 526, 918
BsmAI	GTCTC	1 cut(s)	806
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	3 cut(s)	55, 134, 148
BsmI	GAATGC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
BspACI	CCGC	7 cut(s)	96, 99, 118, 202, 204, 368, 527
BspCNI	CTCAG	2 cut(s)	94, 568
BspDI	ATCGAT	1 cut(s)	171
BspFNI	CGCG	3 cut(s)	120, 199, 204
BspLI	GGNNCC	1 cut(s)	208
BspMAI	CTGCAG	2 cut(s)	423, 910
BspPI	GGATC	4 cut(s)	423, 700, 728, 789
BsrDI	GCAATG	1 cut(s)	897
BsrI	ACTGG	2 cut(s)	160, 912
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
BssNI	GRCGYC	1 cut(s)	227
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	2 cut(s)	14, 131
Bst4CI	ACNGT	2 cut(s)	621, 778
Bst6I	CTCTTC	2 cut(s)	131, 293
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	3 cut(s)	184, 588, 600
BstDEI	CTNAG	2 cut(s)	81, 555
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	397, 814
BstFNI	CGCG	3 cut(s)	120, 199, 204
BstH2I	RGCGCY	1 cut(s)	520
BstHHI	GCGC	3 cut(s)	201, 277, 519
BstKTI	GATC	8 cut(s)	147, 175, 418, 468, 582, 708, 736, 784
BstMAI	GTCTC	1 cut(s)	806
BstMBI	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
BstMCI	CGRYCG	2 cut(s)	118, 175
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 845, 854, 908, 914
BstNI	CCWGG	2 cut(s)	14, 131
BstSCI	CCNGG	2 cut(s)	12, 129
BstSFI	CTRYAG	3 cut(s)	419, 560, 906
BstUI	CGCG	3 cut(s)	120, 199, 204
BstX2I	RGATCY	2 cut(s)	415, 465
BstYI	RGATCY	2 cut(s)	415, 465
Bsu15I	ATCGAT	1 cut(s)	171
BsuTUI	ATCGAT	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	397, 814
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	4 cut(s)	626, 738, 747, 919
Cac8I	GCNNGC	3 cut(s)	184, 588, 600
CfoI	GCGC	3 cut(s)	201, 277, 519
Cfr13I	GGNCC	1 cut(s)	133
Cfr42I	CCGCGG	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	171
CseI	GACGC	4 cut(s)	109, 235, 335, 823
Csp6I	GTAC	1 cut(s)	774
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	2 cut(s)	81, 555
DpnI	GATC	8 cut(s)	146, 174, 417, 467, 581, 707, 735, 783
DpnII	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
Eam1104I	CTCTTC	2 cut(s)	131, 293
EarI	CTCTTC	2 cut(s)	131, 293
EciI	GGCGGA	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	352
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	12, 129
Esp3I	CGTCTC	1 cut(s)	806
FaiI	YATR	5 cut(s)	632, 704, 759, 793, 795
FalI	AAGNNNNNCTT	6 cut(s)	432, 464, 486, 518, 591, 623
FaqI	GGGAC	3 cut(s)	55, 134, 148
FokI	GGATG	2 cut(s)	404, 821
FspBI	CTAG	2 cut(s)	671, 840
GlaI	GCGC	3 cut(s)	200, 276, 518
GsaI	CCCAGC	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	520
HapII	CCGG	1 cut(s)	287
HgaI	GACGC	4 cut(s)	109, 235, 335, 823
HhaI	GCGC	3 cut(s)	201, 277, 519
Hin1I	GRCGYC	1 cut(s)	227
Hin6I	GCGC	3 cut(s)	199, 275, 517
HinP1I	GCGC	3 cut(s)	199, 275, 517
HindIII	AAGCTT	3 cut(s)	500, 584, 846
HinfI	GANTC	6 cut(s)	59, 79, 239, 536, 674, 893
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	205, 759
Hpy188I	TCNGA	4 cut(s)	177, 463, 571, 662
Hpy188III	TCNNGA	3 cut(s)	142, 234, 608
Hpy99I	CGWCG	2 cut(s)	143, 463
HpyAV	CCTTC	3 cut(s)	202, 240, 367
HpyCH4III	ACNGT	2 cut(s)	621, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 845, 854, 908, 914
HpyF3I	CTNAG	2 cut(s)	81, 555
Hsp92I	GRCGYC	1 cut(s)	227
HspAI	GCGC	3 cut(s)	199, 275, 517
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
LmnI	GCTCC	4 cut(s)	194, 212, 376, 663
LweI	GCATC	3 cut(s)	382, 562, 810
MaeI	CTAG	2 cut(s)	671, 840
MaeIII	GTNAC	3 cut(s)	211, 615, 921
MalI	GATC	8 cut(s)	146, 174, 417, 467, 581, 707, 735, 783
MboI	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
MboII	GAAGA	7 cut(s)	118, 310, 764, 779, 812, 902, 920
MflI	RGATCY	2 cut(s)	415, 465
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	254, 428
MlyI	GAGTC	2 cut(s)	73, 668
MmeI	TCCRAC	4 cut(s)	87, 369, 414, 441
MseI	TTAA	1 cut(s)	542
MspA1I	CMGCKG	3 cut(s)	76, 204, 368
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	14, 131
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	2 cut(s)	14, 131
MvnI	CGCG	3 cut(s)	120, 199, 204
MwoI	GCNNNNNNNGC	5 cut(s)	104, 845, 854, 908, 914
NdeII	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	4 cut(s)	111, 144, 153, 333
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	4 cut(s)	59, 239, 536, 893
PflFI	GACNNNGTC	3 cut(s)	82, 119, 137
PfoI	TCCNGGA	2 cut(s)	12, 129
Ple19I	CGATCG	1 cut(s)	175
PleI	GAGTC	2 cut(s)	73, 668
PpsI	GAGTC	2 cut(s)	73, 668
PpuMI	RGGWCCY	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	12, 129
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	12, 129
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	133
PspPPI	RGGWCCY	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	352
PstI	CTGCAG	2 cut(s)	423, 910
PsuI	RGATCY	2 cut(s)	415, 465
PsyI	GACNNNGTC	3 cut(s)	82, 119, 137
PvuI	CGATCG	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
SacII	CCGCGG	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	542
Sau3AI	GATC	8 cut(s)	144, 172, 415, 465, 579, 705, 733, 781
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	2 cut(s)	73, 668
ScrFI	CCNGG	2 cut(s)	14, 131
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	382, 562, 810
SfcI	CTRYAG	3 cut(s)	419, 560, 906
Sfr274I	CTCGAG	1 cut(s)	352
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	352, 503
SmoI	CTYRAG	2 cut(s)	352, 503
Sse9I	AATT	2 cut(s)	254, 428
SsiI	CCGC	7 cut(s)	96, 99, 118, 202, 204, 368, 527
SspMI	CTAG	2 cut(s)	671, 840
StyD4I	CCNGG	2 cut(s)	12, 129
TaaI	ACNGT	2 cut(s)	621, 778
TaqI	TCGA	5 cut(s)	114, 141, 171, 341, 353
TasI	AATT	2 cut(s)	254, 428
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	3 cut(s)	101, 204, 207
TfiI	GAWTC	4 cut(s)	59, 239, 536, 893
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	4 cut(s)	626, 745, 754, 919
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	903
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	4 cut(s)	626, 745, 754, 919
Tth111I	GACNNNGTC	3 cut(s)	82, 119, 137
VpaK11BI	GGWCC	1 cut(s)	133
XagI	CCTNNNNNAGG	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	352
XspI	CTAG	2 cut(s)	671, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.