Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

16703336 .. 16706467

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G210000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTACGAGGCACAGAATTTCCTGGAATCGCAAGATAATTCAAGTAATTTTGGCCAGGACCTAAAATCGTGGCTTTCAGGGGATGCCAACTCGTCCCCAACTCAGTCCTCACTCGCTCATTCTTCCACCACCACCACCCACAACAGCAATGTCGATCGCGTCCTCTTCAAAGACCTCGTCGAGATCGTCCCTCTCGTTCAGTCCCTCATCGATCGGAAAGCAAGCAGTTCGTTTACGCGGCGTGGTTCGGTGACCTACACCAAGACACCTTCTAGAGAATCCTTATCCAAAAAAGTAACTGAACAAAAAGGGAGGAATCCAGCTCAATCCATTCCCATAAGAAAGAAGAGGGATCATGGAGACAAGGACCCCAGCACAAATTCTAGCAATAACCCTGATTCTGACATCTTTTCTAATTTTTCCTCAAGAACTTCAGCAGAGCAAGAAGAGTTGGATGCATTAAGGGTACAAGTGGATGATCTACAAAGAAAAGTATTAGAGAAGGAGGAACTTTTAAAGTCATCGGAGATATCAAAGGACCAAATGAAAGCTATTCAAGCAAAACTTGACGAAATGAAGCACCAAGTTTCAGAAAAGGATGCGTTAATCAAGGCTGCTAAGCTACAACTCTCCGATGCAAAGATTAAGCTTGCAGATAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGCAATGACATCTAACAGGAAAGTGGAGAAGCTTCAGGAGGAGCTAGACTCCTTGCAAGGACAGATTTCATCGTTTATGTTCCTATTTGAAGGCTTGATGAAAGCGGATGCCATTGTATACGGTGAAGATTATGATATTTCACCGTGCACTGTGGATCATCTTCCTCATATCGATGATTTGGATGAGACGCATATGCGGAAAATGGAAGAAGCTAGAAAAGTTTACATCACTGCTGTTGCCGCTGCAAAAGAAAAGCAAGATGAAGAATCTATTGCTGCTGCAGCCAGTGCAAGGTTACAACTTCAATCATTGGTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

37.64

Weight (kDa)

5.44

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	2 cut(s)	159, 238
AciI	CCGC	4 cut(s)	238, 794, 886, 930
AclWI	GGATC	2 cut(s)	360, 852
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	16, 379
AcuI	CTGAAG	2 cut(s)	417, 707
AfaI	GTAC	2 cut(s)	5, 468
AfiI	CCNNNNNNNGG	1 cut(s)	981
AgsI	TTSAA	5 cut(s)	42, 169, 557, 779, 995
AjnI	CCWGG	2 cut(s)	21, 54
AluBI	AGCT	8 cut(s)	323, 551, 622, 649, 665, 721, 733, 902
AluI	AGCT	8 cut(s)	323, 551, 622, 649, 665, 721, 733, 902
Alw21I	GWGCWC	1 cut(s)	839
Alw26I	GTCTC	2 cut(s)	354, 869
Alw44I	GTGCAC	1 cut(s)	835
AlwI	GGATC	2 cut(s)	360, 852
AoxI	GGCC	1 cut(s)	52
ApaLI	GTGCAC	1 cut(s)	835
ApeKI	GCWGC	6 cut(s)	614, 665, 932, 965, 968, 971
ApoI	RAATTY	2 cut(s)	16, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AspS9I	GGNCC	3 cut(s)	58, 367, 538
AsuHPI	GGTGA	3 cut(s)	262, 822, 824
AvaII	GGWCC	3 cut(s)	58, 367, 538
BaeGI	GKGCMC	1 cut(s)	839
BalI	TGGCCA	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	839
BbvI	GCAGC	6 cut(s)	601, 652, 919, 952, 955, 983
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	2 cut(s)	23, 56
BcoDI	GTCTC	2 cut(s)	354, 869
BfaI	CTAG	4 cut(s)	273, 384, 734, 903
BfmI	CTRYAG	1 cut(s)	969
BisI	GCNGC	8 cut(s)	239, 615, 666, 930, 933, 966, 969, 972
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	8 cut(s)	240, 616, 667, 931, 934, 967, 970, 973
Bme1390I	CCNGG	2 cut(s)	23, 56
Bme18I	GGWCC	3 cut(s)	58, 367, 538
BmgT120I	GGNCC	3 cut(s)	58, 367, 538
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	23, 56
BmsI	GCATC	5 cut(s)	73, 445, 589, 625, 787
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	409
Bsa29I	ATCGAT	2 cut(s)	210, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	981
Bse1I	ACTGG	1 cut(s)	975
Bse3DI	GCAATG	2 cut(s)	154, 699
BseBI	CCWGG	2 cut(s)	23, 56
BseCI	ATCGAT	2 cut(s)	210, 861
BseGI	GGATG	6 cut(s)	88, 460, 481, 604, 802, 877
BseLI	CCNNNNNNNGG	1 cut(s)	981
BseMI	GCAATG	2 cut(s)	154, 699
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	975
BseRI	GAGGAG	1 cut(s)	743
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	6 cut(s)	601, 652, 919, 952, 955, 983
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	2 cut(s)	159, 238
Bsh1285I	CGRYCG	2 cut(s)	157, 214
BshFI	GGCC	1 cut(s)	54
BshVI	ATCGAT	2 cut(s)	210, 861
BsiEI	CGRYCG	2 cut(s)	157, 214
BsiHKAI	GWGCWC	1 cut(s)	839
BslFI	GGGAC	3 cut(s)	79, 173, 187
BslI	CCNNNNNNNGG	1 cut(s)	981
BsmAI	GTCTC	2 cut(s)	354, 869
BsmBI	CGTCTC	1 cut(s)	869
BsmFI	GGGAC	3 cut(s)	79, 173, 187
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp143I	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	4 cut(s)	238, 794, 886, 930
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	2 cut(s)	210, 861
BspFNI	CGCG	2 cut(s)	159, 238
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	2 cut(s)	360, 852
BsrDI	GCAATG	2 cut(s)	154, 699
BsrI	ACTGG	1 cut(s)	975
BssMI	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
BssNAI	GTATAC	1 cut(s)	808
Bst1107I	GTATAC	1 cut(s)	808
Bst2UI	CCWGG	2 cut(s)	23, 56
Bst4CI	ACNGT	4 cut(s)	684, 812, 834, 841
Bst6I	CTCTTC	3 cut(s)	170, 341, 441
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstC8I	GCNNGC	3 cut(s)	223, 651, 663
BstDEI	CTNAG	2 cut(s)	102, 618
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	6 cut(s)	88, 460, 481, 604, 802, 877
BstFNI	CGCG	2 cut(s)	159, 238
BstKTI	GATC	6 cut(s)	157, 186, 214, 355, 481, 847
BstMAI	GTCTC	2 cut(s)	354, 869
BstMBI	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
BstMCI	CGRYCG	2 cut(s)	157, 214
BstMWI	GCNNNNNNNGC	4 cut(s)	557, 929, 971, 977
BstNI	CCWGG	2 cut(s)	23, 56
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	21, 54
BstSFI	CTRYAG	1 cut(s)	969
BstSLI	GKGCMC	1 cut(s)	839
BstUI	CGCG	2 cut(s)	159, 238
BstV1I	GCAGC	6 cut(s)	601, 652, 919, 952, 955, 983
BstZ17I	GTATAC	1 cut(s)	808
Bsu15I	ATCGAT	2 cut(s)	210, 861
BsuRI	GGCC	1 cut(s)	54
BsuTUI	ATCGAT	2 cut(s)	210, 861
BtsCI	GGATG	6 cut(s)	88, 460, 481, 604, 802, 877
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	4 cut(s)	689, 837, 918, 982
Cac8I	GCNNGC	3 cut(s)	223, 651, 663
Cfr13I	GGNCC	3 cut(s)	58, 367, 538
ClaI	ATCGAT	2 cut(s)	210, 861
CseI	GACGC	2 cut(s)	148, 886
Csp6I	GTAC	2 cut(s)	4, 467
CviAII	CATG	1 cut(s)	356
CviQI	GTAC	2 cut(s)	4, 467
DdeI	CTNAG	2 cut(s)	102, 618
DpnI	GATC	6 cut(s)	156, 185, 213, 354, 480, 846
DpnII	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
DraI	TTTAAA	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	3 cut(s)	170, 341, 441
EarI	CTCTTC	3 cut(s)	170, 341, 441
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	58, 367, 538
Eco57I	CTGAAG	2 cut(s)	417, 707
Eco91I	GGTNACC	1 cut(s)	250
EcoO109I	RGGNCCY	2 cut(s)	58, 367
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	21, 54
EcoRV	GATATC	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	460
Esp3I	CGTCTC	1 cut(s)	869
FaeI	CATG	1 cut(s)	359
FaiI	YATR	8 cut(s)	338, 357, 767, 808, 822, 858, 882, 884
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	3 cut(s)	79, 173, 187
FatI	CATG	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	882
FblI	GTMKAC	1 cut(s)	807
Fnu4HI	GCNGC	8 cut(s)	239, 615, 666, 930, 933, 966, 969, 972
FokI	GGATG	6 cut(s)	95, 467, 488, 611, 809, 884
Fsp4HI	GCNGC	8 cut(s)	239, 615, 666, 930, 933, 966, 969, 972
FspBI	CTAG	4 cut(s)	273, 384, 734, 903
GluI	GCNGC	8 cut(s)	239, 615, 666, 930, 933, 966, 969, 972
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	54
HgaI	GACGC	2 cut(s)	148, 886
Hin1II	CATG	1 cut(s)	359
HindIII	AAGCTT	2 cut(s)	647, 719
HinfI	GANTC	6 cut(s)	26, 278, 316, 398, 737, 956
HphI	GGTGA	3 cut(s)	262, 822, 824
Hpy166II	GTNNAC	4 cut(s)	234, 808, 837, 913
Hpy188I	TCNGA	5 cut(s)	216, 403, 526, 592, 634
Hpy188III	TCNNGA	4 cut(s)	181, 273, 426, 725
Hpy8I	GTNNAC	4 cut(s)	234, 808, 837, 913
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	279, 496, 773
HpyCH4III	ACNGT	4 cut(s)	684, 812, 834, 841
HpyCH4V	TGCA	8 cut(s)	458, 638, 653, 745, 837, 935, 971, 980
HpyF10VI	GCNNNNNNNGC	4 cut(s)	557, 929, 971, 977
HpyF3I	CTNAG	2 cut(s)	102, 618
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	6 cut(s)	601, 652, 919, 952, 955, 983
LweI	GCATC	5 cut(s)	73, 445, 589, 625, 787
MaeI	CTAG	4 cut(s)	273, 384, 734, 903
MaeIII	GTNAC	4 cut(s)	250, 295, 678, 984
MalI	GATC	6 cut(s)	156, 185, 213, 354, 480, 846
MboI	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
MboII	GAAGA	8 cut(s)	114, 157, 358, 458, 827, 842, 908, 965
MhlI	GDGCHC	1 cut(s)	839
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	5 cut(s)	16, 37, 46, 379, 415
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	432
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	460
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	4 cut(s)	461, 515, 605, 645
MslI	CAYNNNNRTG	1 cut(s)	861
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	932
MspR9I	CCNGG	2 cut(s)	23, 56
MvaI	CCWGG	2 cut(s)	23, 56
MvnI	CGCG	2 cut(s)	159, 238
MwoI	GCNNNNNNNGC	4 cut(s)	557, 929, 971, 977
NdeI	CATATG	1 cut(s)	882
NdeII	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 192
PfeI	GAWTC	5 cut(s)	26, 278, 316, 398, 956
PflFI	GACNNNGTC	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	8 cut(s)	240, 616, 667, 931, 934, 967, 970, 973
Ple19I	CGATCG	2 cut(s)	157, 214
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
PpuMI	RGGWCCY	2 cut(s)	58, 367
Psp5II	RGGWCCY	2 cut(s)	58, 367
Psp6I	CCWGG	2 cut(s)	21, 54
PspEI	GGTNACC	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	2 cut(s)	21, 54
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	3 cut(s)	58, 367, 538
PspPPI	RGGWCCY	2 cut(s)	58, 367
PstI	CTGCAG	1 cut(s)	973
PsyI	GACNNNGTC	1 cut(s)	176
PvuI	CGATCG	2 cut(s)	157, 214
RsaI	GTAC	2 cut(s)	5, 468
RsaNI	GTAC	2 cut(s)	4, 467
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	4 cut(s)	461, 515, 605, 645
SatI	GCNGC	8 cut(s)	239, 615, 666, 930, 933, 966, 969, 972
Sau3AI	GATC	6 cut(s)	154, 183, 211, 352, 478, 844
Sau96I	GGNCC	3 cut(s)	58, 367, 538
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	2 cut(s)	23, 56
SduI	GDGCHC	1 cut(s)	839
SfaNI	GCATC	5 cut(s)	73, 445, 589, 625, 787
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	3 cut(s)	58, 367, 538
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	5 cut(s)	16, 37, 46, 379, 415
SsiI	CCGC	4 cut(s)	238, 794, 886, 930
SspMI	CTAG	4 cut(s)	273, 384, 734, 903
StyD4I	CCNGG	2 cut(s)	21, 54
TaaI	ACNGT	4 cut(s)	684, 812, 834, 841
TaqI	TCGA	4 cut(s)	153, 180, 210, 861
TasI	AATT	5 cut(s)	16, 37, 46, 379, 415
TauI	GCSGC	2 cut(s)	241, 932
TfiI	GAWTC	5 cut(s)	26, 278, 316, 398, 956
Tru1I	TTAA	4 cut(s)	461, 515, 605, 645
Tru9I	TTAA	4 cut(s)	461, 515, 605, 645
TscAI	CASTG	4 cut(s)	689, 844, 925, 982
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	6 cut(s)	614, 665, 932, 965, 968, 971
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	5 cut(s)	560, 590, 747, 803, 966
TspRI	CASTG	4 cut(s)	689, 844, 925, 982
Tth111I	GACNNNGTC	1 cut(s)	176
VneI	GTGCAC	1 cut(s)	835
VpaK11BI	GGWCC	3 cut(s)	58, 367, 538
XapI	RAATTY	2 cut(s)	16, 379
XbaI	TCTAGA	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	807
XspI	CTAG	4 cut(s)	273, 384, 734, 903
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.