Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Forward (+)

12576178 .. 12577681

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017072

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTTCCTCCTTCATTATATGGTCATTTCAGGGACTTGACTGACCACCACCACCACCACCTGACTTTGTCCTCCTACGCCGCCAACGGCAACATCGACCGCGTCCTCTTCCAAGAGCTCATCGAGATCATCCCTCTTGTCCAGTCCCTCATCGATCCGGAAGCCAGCAGTTCATTTACACGGCGCGGTTCAGTCACATACAGCAAGACACCTTCGAGAGACTCCTTATCCAACAAAAATGTGTGCAACACGTTAAAAAAAGGGCCGGGCATTGGTCGAAAGATTACCAGAAGATGGAAGCTTCAAAATTGGCCTTGTGGTTTTCTTTGTGACTCACCTCCAAAATCAGTGAAGAACCTCTGTAAAAAGAACAATATAGTTAGTAGCAAAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.9

Weight (kDa)

9.87

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	2 cut(s)	102, 186
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	3 cut(s)	81, 100, 186
AclWI	GGATC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	272, 294
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	2 cut(s)	118, 301
AluI	AGCT	2 cut(s)	118, 301
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	149
Aor13HI	TCCGGA	1 cut(s)	157
AoxI	GGCC	2 cut(s)	263, 311
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	2 cut(s)	103, 197
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 294
Bse1I	ACTGG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	157
BseCI	ATCGAT	1 cut(s)	153
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	272, 294
BseNI	ACTGG	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	102, 186
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	265, 313
BshVI	ATCGAT	1 cut(s)	153
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	158, 266
BslFI	GGGAC	2 cut(s)	47, 130
BslI	CCNNNNNNNGG	2 cut(s)	272, 294
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	47, 130
BsnI	GGCC	2 cut(s)	265, 313
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	126, 154
BspACI	CCGC	3 cut(s)	81, 100, 186
BspANI	GGCC	2 cut(s)	265, 313
BspDI	ATCGAT	1 cut(s)	153
BspEI	TCCGGA	1 cut(s)	157
BspFNI	CGCG	2 cut(s)	102, 186
BspPI	GGATC	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	126, 154
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	2 cut(s)	102, 186
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	129, 157
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	126, 154
BstMCI	CGRYCG	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	265
BstUI	CGCG	2 cut(s)	102, 186
Bsu15I	ATCGAT	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	265, 313
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	263
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	1 cut(s)	91
CviJI	RGCY	5 cut(s)	118, 164, 265, 301, 313
CviKI_1	RGCY	5 cut(s)	118, 164, 265, 301, 313
DpnI	GATC	2 cut(s)	128, 156
DpnII	GATC	2 cut(s)	126, 154
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	120
FaiI	YATR	4 cut(s)	19, 21, 199, 377
FaqI	GGGAC	2 cut(s)	47, 130
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	265, 313
HapII	CCGG	2 cut(s)	158, 266
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	221, 332
HpaII	CCGG	2 cut(s)	158, 266
HphI	GGTGA	1 cut(s)	327
Hpy188III	TCNNGA	3 cut(s)	124, 158, 216
HpyAV	CCTTC	2 cut(s)	21, 222
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	251
HspAI	GCGC	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	126, 154
LpnPI	CCDG	7 cut(s)	16, 74, 155, 171, 178, 279, 301
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	193, 329
MalI	GATC	2 cut(s)	128, 156
MboI	GATC	2 cut(s)	126, 154
MboII	GAAGA	3 cut(s)	100, 303, 364
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	307
MlyI	GAGTC	2 cut(s)	215, 326
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	7 cut(s)	18, 82, 116, 144, 158, 348, 368
MroI	TCCGGA	1 cut(s)	157
MseI	TTAA	1 cut(s)	254
MspI	CCGG	2 cut(s)	158, 266
MspR9I	CCNGG	1 cut(s)	267
MvnI	CGCG	2 cut(s)	102, 186
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	126, 154
NmuCI	GTSAC	2 cut(s)	193, 329
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PflFI	GACNNNGTC	2 cut(s)	67, 101
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	215, 326
PpsI	GAGTC	2 cut(s)	215, 326
Psp124BI	GAGCTC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	263
PsyI	GACNNNGTC	2 cut(s)	67, 101
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	126, 154
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	215, 326
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	7 cut(s)	63, 120, 214, 254, 303, 340, 360
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	81, 100, 186
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	265
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	5 cut(s)	96, 123, 153, 215, 277
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	193, 329
Tsp45I	GTSAC	2 cut(s)	193, 329
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	354
Tth111I	GACNNNGTC	2 cut(s)	67, 101
Van91I	CCANNNNNTGG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.