Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

4510716 .. 4512654

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG062200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCAGCATTTACTGGATTTGCAGGATAACCGGACCCATTTCGCTGACCCGAAATGGGAATCCAACTCGTCTCCGACTCACCACCACCTGACTCAGTCCTCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACCTCGACCGCGTCCTCTTCCAAGACCTCGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCCAGCAGCTCATTCACGCGCCGCGGTTCGGTCACCTACACCAAGACGCCTTCCAGAGACACCATATCCAAAAAAGTGCCGAACAGGAATGGGGCTCAATCCATGCCGGCAAGAAAGAAGAGGGAGAGTGCTAGCAATAACCCGGATGCTGACAGCGTTTTAAGTTTTTCCTCAAAGGCTTCGGCGGCAGAAAAGGACGACGAAGAGGAGTTGGATGCGTTAAGGGTTCAGTTGGAGGATCTGCAGAGGAAATTGTTGGAGAAAGATGAACTTTTGAAGTCGTCGGAGATCTCAAAGAACCAAGTGAGTGCTGTTCAAGCAAAACTTGAGGAACTGAAGCGCCAAGCTGCGCAAAAGGATTCTGTAATCAAGGCTTCTCAGCTACAACTATCTGATGCAAAGATCAAGCTTGCAGACAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGCTATGACATCAAACAAGAGTGCAGAGAAGCTCCAAGGAGAGCTAGACTCTTTGCGAGGAGACATTTCCACAATTATGATCCTATTCGAAGGCTTGGTGAAAACTGATTCTACTCCATCTGCTGAAGATTATGATATTTCACCTTGTACTGTGGATCATCTTCCATATATTGACGATTGGGATGAGTCGCAGATGCAGAGAATGGAAGCTGCTAGAAAAGCTTACGAAGCTGCTGTTGTTGCTGCAAAAGAAAGGCAAGATGAAGAATCTATTGCTGCTGCAGCCAATGCAAGGTTACATCTTCAATCGTTTGTTTTGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.46

Weight (kDa)

5.52

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	561
AccII	CGCG	3 cut(s)	150, 229, 234
AciI	CCGC	4 cut(s)	148, 232, 234, 395
AclWI	GGATC	3 cut(s)	456, 733, 822
AcuI	CTGAAG	2 cut(s)	566, 804
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	3 cut(s)	55, 238, 951
AgsI	TTSAA	4 cut(s)	487, 527, 965, 979
Alw26I	GTCTC	3 cut(s)	75, 261, 714
AlwI	GGATC	3 cut(s)	456, 733, 822
AspLEI	GCGC	3 cut(s)	231, 552, 562
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	4 cut(s)	71, 235, 769, 792
AsuII	TTCGAA	1 cut(s)	747
AsuNHI	GCTAGC	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	307
BccI	CCATC	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	75, 261, 714
BfaI	CTAG	3 cut(s)	342, 704, 873
BfmI	CTRYAG	2 cut(s)	452, 939
BfoI	RGCGCY	1 cut(s)	553
BglII	AGATCT	1 cut(s)	498
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	4 cut(s)	346, 415, 595, 843
BmtI	GCTAGC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	232, 694
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 238, 951
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	18, 190
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	232, 694
BseGI	GGATG	3 cut(s)	361, 430, 847
BseLI	CCNNNNNNNGG	3 cut(s)	55, 238, 951
BseMII	CTCAG	2 cut(s)	107, 602
BseNI	ACTGG	2 cut(s)	18, 190
BseRI	GAGGAG	2 cut(s)	431, 732
BsgI	GTGCAG	1 cut(s)	702
Bsh1236I	CGCG	3 cut(s)	150, 229, 234
Bsh1285I	CGRYCG	2 cut(s)	148, 205
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	2 cut(s)	148, 205
BsiSI	CCGG	3 cut(s)	31, 317, 353
BslFI	GGGAC	2 cut(s)	164, 178
BslI	CCNNNNNNNGG	3 cut(s)	55, 238, 951
BsmAI	GTCTC	3 cut(s)	75, 261, 714
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	164, 178
Bsp119I	TTCGAA	1 cut(s)	747
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
BspACI	CCGC	4 cut(s)	148, 232, 234, 395
BspCNI	CTCAG	2 cut(s)	106, 601
BspDI	ATCGAT	1 cut(s)	201
BspFNI	CGCG	3 cut(s)	150, 229, 234
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	2 cut(s)	456, 943
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	456, 733, 822
BspT104I	TTCGAA	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	18, 190
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	2 cut(s)	232, 694
BssMI	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	694
Bst4CI	ACNGT	2 cut(s)	654, 811
Bst6I	CTCTTC	3 cut(s)	161, 323, 408
BstACI	GRCGYC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	5 cut(s)	214, 318, 343, 621, 633
BstDEI	CTNAG	2 cut(s)	93, 588
BstDSI	CCRYGG	1 cut(s)	232
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	361, 430, 847
BstFNI	CGCG	3 cut(s)	150, 229, 234
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	3 cut(s)	231, 552, 562
BstKTI	GATC	7 cut(s)	177, 205, 451, 501, 615, 741, 817
BstMAI	GTCTC	3 cut(s)	75, 261, 714
BstMBI	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
BstMCI	CGRYCG	2 cut(s)	148, 205
BstMWI	GCNNNNNNNGC	7 cut(s)	395, 527, 878, 887, 899, 941, 947
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	2 cut(s)	452, 939
BstUI	CGCG	3 cut(s)	150, 229, 234
BstX2I	RGATCY	2 cut(s)	448, 498
BstYI	RGATCY	2 cut(s)	448, 498
Bsu15I	ATCGAT	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	361, 430, 847
BtsIMutI	CAGTG	1 cut(s)	659
Cac8I	GCNNGC	5 cut(s)	214, 318, 343, 621, 633
CfoI	GCGC	3 cut(s)	231, 552, 562
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	33
Cfr42I	CCGCGG	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	201
CseI	GACGC	2 cut(s)	139, 265
Csp6I	GTAC	1 cut(s)	807
CviAII	CATG	1 cut(s)	313
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	2 cut(s)	93, 588
DpnI	GATC	7 cut(s)	176, 204, 450, 500, 614, 740, 816
DpnII	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
Eam1104I	CTCTTC	3 cut(s)	161, 323, 408
EarI	CTCTTC	3 cut(s)	161, 323, 408
Eco130I	CCWWGG	1 cut(s)	694
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	566, 804
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	694
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	316
FaiI	YATR	7 cut(s)	275, 314, 665, 737, 792, 826, 828
FalI	AAGNNNNNCTT	4 cut(s)	465, 497, 519, 551
FaqI	GGGAC	2 cut(s)	164, 178
FatI	CATG	1 cut(s)	312
FokI	GGATG	3 cut(s)	368, 437, 854
FriOI	GRGCYC	1 cut(s)	307
FspBI	CTAG	3 cut(s)	342, 704, 873
FspI	TGCGCA	1 cut(s)	561
GlaI	GCGC	3 cut(s)	230, 551, 561
HaeII	RGCGCY	1 cut(s)	553
HapII	CCGG	3 cut(s)	31, 317, 353
HgaI	GACGC	2 cut(s)	139, 265
HhaI	GCGC	3 cut(s)	231, 552, 562
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	3 cut(s)	229, 550, 560
HinP1I	GCGC	3 cut(s)	229, 550, 560
HindIII	AAGCTT	2 cut(s)	617, 879
HinfI	GANTC	8 cut(s)	59, 76, 91, 569, 707, 767, 845, 926
HpaII	CCGG	3 cut(s)	31, 317, 353
HphI	GGTGA	4 cut(s)	71, 235, 769, 792
Hpy188I	TCNGA	4 cut(s)	75, 207, 496, 604
Hpy188III	TCNNGA	2 cut(s)	172, 264
Hpy99I	CGWCG	3 cut(s)	173, 413, 496
HpyAV	CCTTC	2 cut(s)	270, 743
HpyCH4III	ACNGT	2 cut(s)	654, 811
HpyF10VI	GCNNNNNNNGC	7 cut(s)	395, 527, 878, 887, 899, 941, 947
HpyF3I	CTNAG	2 cut(s)	93, 588
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	3 cut(s)	229, 550, 560
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
LmnI	GCTCC	1 cut(s)	696
LpnPI	CCDG	9 cut(s)	8, 44, 101, 203, 226, 277, 280, 330, 366
LweI	GCATC	4 cut(s)	346, 415, 595, 843
MaeI	CTAG	3 cut(s)	342, 704, 873
MaeIII	GTNAC	3 cut(s)	241, 648, 954
MalI	GATC	7 cut(s)	176, 204, 450, 500, 614, 740, 816
MboI	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
MboII	GAAGA	7 cut(s)	148, 340, 425, 797, 812, 935, 953
MflI	RGATCY	2 cut(s)	448, 498
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	2 cut(s)	461, 732
MlyI	GAGTC	4 cut(s)	70, 85, 701, 854
MmeI	TCCRAC	7 cut(s)	87, 98, 126, 402, 423, 447, 474
MroNI	GCCGGC	1 cut(s)	316
MseI	TTAA	2 cut(s)	371, 431
MslI	CAYNNNNRTG	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	3 cut(s)	31, 317, 353
MspR9I	CCNGG	1 cut(s)	353
MvnI	CGCG	3 cut(s)	150, 229, 234
MwoI	GCNNNNNNNGC	7 cut(s)	395, 527, 878, 887, 899, 941, 947
NaeI	GCCGGC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
NgoMIV	GCCGGC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	241
NsbI	TGCGCA	1 cut(s)	561
NspV	TTCGAA	1 cut(s)	747
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 174, 183
PdiI	GCCGGC	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	59, 569, 767, 926
PflFI	GACNNNGTC	3 cut(s)	94, 149, 167
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	4 cut(s)	70, 85, 701, 853
PpsI	GAGTC	4 cut(s)	70, 85, 701, 853
PspEI	GGTNACC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	2 cut(s)	456, 943
PsuI	RGATCY	2 cut(s)	448, 498
PsyI	GACNNNGTC	3 cut(s)	94, 149, 167
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
RseI	CAYNNNNRTG	1 cut(s)	734
SacII	CCGCGG	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	371, 431
Sau3AI	GATC	7 cut(s)	174, 202, 448, 498, 612, 738, 814
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	4 cut(s)	70, 85, 701, 854
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	4 cut(s)	346, 415, 595, 843
SfcI	CTRYAG	2 cut(s)	452, 939
Sfr303I	CCGCGG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	747
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	734
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	2 cut(s)	461, 732
SsiI	CCGC	4 cut(s)	148, 232, 234, 395
SspMI	CTAG	3 cut(s)	342, 704, 873
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	2 cut(s)	654, 811
TaqI	TCGA	4 cut(s)	144, 171, 201, 747
TaqII	GACCGA	1 cut(s)	229
TasI	AATT	2 cut(s)	461, 732
TatI	WGTACW	1 cut(s)	806
TauI	GCSGC	2 cut(s)	234, 398
TfiI	GAWTC	4 cut(s)	59, 569, 767, 926
Tru1I	TTAA	2 cut(s)	371, 431
Tru9I	TTAA	2 cut(s)	371, 431
TscAI	CASTG	1 cut(s)	659
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	492, 936
TspRI	CASTG	1 cut(s)	659
Tth111I	GACNNNGTC	3 cut(s)	94, 149, 167
VpaK11BI	GGWCC	1 cut(s)	33
XspI	CTAG	3 cut(s)	342, 704, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.