Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

15399986 .. 15404673

Gene Structure 4688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0184000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCGCTCACTCCCTCTCCAAGCTTCCAGCTTTCGTCTCTGCCTTCAATCCCAATCAAACAACCAAACCCGAATCGTGTTCTCTACCTCTGACCACGACTTTGAAGCCCACAAGTCTACAGAATCTATGGCTCGGAACCAACAGTCTCGGAGTCAGAGCCCAACTGCCAAAGCTCCGACCTTTCTCTTCCACAATCTGCCTCAGCCTCCCGACCGCAATCAAGGAGAGAGTTTCGTCCAATGAGGAAGTGCCCAAATGGTCTAGCAGGGCTATAAAGTCATTTGCCATGGGCGAATTGGAAGCCAGGAAGCTCAAGTACCCAACCACTGGGACTGAAGCAATTCTCATGGGTATCCTCATTGAGGGAACCACTTTGGCTTCAAAATTTTTGCGGGCAAATGGAGTTACACTGTTCAAGGTGCGTGAAGAAACCATCAAGTTACTTGGGAAAGCTGATATGTACTTTTTCAGTCCTGAGCATCCTGCATTGACTGACGAAGCTCAAAGAGTGCTCGACTGGGCTGTTGATAAGAAAATAAAATCTGGTGGTGGTGGCGAAATTACAACATCTCATCTGCTTCTTGGCATTTGGTATGAAGTGGATTCACCGGGTCACAAGATAATGGCCTCCCTTGGCTTCAATGAAGAGAAAGTGAAAGAGCTGGAGTCTTTAATTTCTGAACCTGGATTCATTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

234

Amino Acids

25.59

Weight (kDa)

8.45

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	88 - 209	1.1e-11	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	3 cut(s)	6, 216, 394
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	320, 464
AfiI	CCNNNNNNNGG	2 cut(s)	329, 364
AgsI	TTSAA	5 cut(s)	49, 106, 384, 418, 643
AjnI	CCWGG	2 cut(s)	305, 685
AluBI	AGCT	7 cut(s)	25, 32, 175, 313, 455, 503, 664
AluI	AGCT	7 cut(s)	25, 32, 175, 313, 455, 503, 664
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	43, 152
AoxI	GGCC	2 cut(s)	3, 627
ApoI	RAATTY	1 cut(s)	386
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	163
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
Bbv12I	GWGCWC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	203
BccI	CCATC	2 cut(s)	443, 692
BciT130I	CCWGG	2 cut(s)	307, 687
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	2 cut(s)	43, 152
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	307, 612, 687
BmiI	GGNNCC	2 cut(s)	139, 370
BmrFI	CCNGG	3 cut(s)	307, 612, 687
BmrI	ACTGGG	2 cut(s)	339, 529
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	2 cut(s)	339, 529
BpmI	CTGGAG	1 cut(s)	686
Bpu10I	CCTNAGC	2 cut(s)	203, 477
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	288, 634
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 364
Bse1I	ACTGG	2 cut(s)	334, 524
BseBI	CCWGG	2 cut(s)	307, 687
BseDI	CCNNGG	2 cut(s)	288, 634
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	329, 364
BseMII	CTCAG	2 cut(s)	217, 468
BseNI	ACTGG	2 cut(s)	334, 524
BseSI	GKGCMC	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	5, 629
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	329, 364
BsmAI	GTCTC	2 cut(s)	43, 152
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	5, 629
Bsp1286I	GDGCHC	3 cut(s)	163, 255, 516
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	3 cut(s)	6, 216, 394
BspANI	GGCC	2 cut(s)	5, 629
BspCNI	CTCAG	2 cut(s)	216, 469
BspLI	GGNNCC	2 cut(s)	139, 370
BsrBI	CCGCTC	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	334, 524
BssECI	CCNNGG	2 cut(s)	288, 634
BssT1I	CCWWGG	2 cut(s)	288, 634
Bst2UI	CCWGG	2 cut(s)	307, 687
Bst4CI	ACNGT	2 cut(s)	146, 414
Bst6I	CTCTTC	2 cut(s)	193, 642
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	203, 477
BstDSI	CCRYGG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	481
BstMAI	GTCTC	2 cut(s)	43, 152
BstMCI	CGRYCG	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	307, 687
BstSCI	CCNGG	3 cut(s)	305, 610, 685
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	5, 629
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	327, 410
Cac8I	GCNNGC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	319, 463
CviAII	CATG	2 cut(s)	289, 349
CviQI	GTAC	2 cut(s)	319, 463
DdeI	CTNAG	2 cut(s)	203, 477
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	193, 642
EarI	CTCTTC	2 cut(s)	193, 642
Eco130I	CCWWGG	2 cut(s)	288, 634
Eco24I	GRGCYC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	305, 685
EcoT14I	CCWWGG	2 cut(s)	288, 634
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	288, 634
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	292, 352
FaiI	YATR	6 cut(s)	130, 275, 290, 350, 461, 597
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	288, 348
FauI	CCCGC	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	5, 629
HapII	CCGG	1 cut(s)	611
Hin1II	CATG	2 cut(s)	292, 352
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	6 cut(s)	74, 124, 153, 605, 668, 690
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	600
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	6 cut(s)	93, 137, 152, 158, 179, 682
Hpy188III	TCNNGA	2 cut(s)	211, 476
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	146, 414
HpyCH4V	TGCA	1 cut(s)	488
HpyF3I	CTNAG	2 cut(s)	203, 477
Hsp92II	CATG	2 cut(s)	292, 352
LmnI	GCTCC	1 cut(s)	180
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	3 cut(s)	406, 441, 614
MbiI	CCGCTC	1 cut(s)	8
MboII	GAAGA	3 cut(s)	180, 440, 659
MhlI	GDGCHC	3 cut(s)	163, 255, 516
MluCI	AATT	5 cut(s)	296, 342, 386, 561, 675
MlyI	GAGTC	2 cut(s)	162, 677
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	8 cut(s)	26, 99, 212, 218, 238, 358, 368, 640
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	1 cut(s)	674
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	3 cut(s)	307, 612, 687
MvaI	CCWGG	2 cut(s)	307, 687
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	288
NlaIII	CATG	2 cut(s)	292, 352
NlaIV	GGNNCC	2 cut(s)	139, 370
NmuCI	GTSAC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	4 cut(s)	74, 124, 605, 690
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	161, 676
PpsI	GAGTC	2 cut(s)	161, 676
Psp6I	CCWGG	2 cut(s)	305, 685
PspGI	CCWGG	2 cut(s)	305, 685
PspN4I	GGNNCC	2 cut(s)	139, 370
RsaI	GTAC	2 cut(s)	320, 464
RsaNI	GTAC	2 cut(s)	319, 463
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	1 cut(s)	6
SchI	GAGTC	2 cut(s)	162, 677
ScrFI	CCNGG	3 cut(s)	307, 612, 687
SduI	GDGCHC	3 cut(s)	163, 255, 516
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	296, 342, 386, 561, 675
SsiI	CCGC	3 cut(s)	6, 216, 394
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	3 cut(s)	305, 610, 685
StyI	CCWWGG	2 cut(s)	288, 634
TaaI	ACNGT	2 cut(s)	146, 414
TaqI	TCGA	1 cut(s)	516
TasI	AATT	5 cut(s)	296, 342, 386, 561, 675
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	74, 124, 605, 690
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TscAI	CASTG	2 cut(s)	334, 417
TseFI	GTSAC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	612, 660, 682
TspRI	CASTG	2 cut(s)	334, 417
Van91I	CCANNNNNTGG	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.