Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

53712644 .. 53722139

Gene Structure 9496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAGGATTAGAACAATGGACGAAACAGGCAGAGCAATTGTCATCTCGACAATTGTCATTTCAAGCACATGAATACCTTCAACAGGTTCCACCTGTTCAACAGATCTATGCTGTTGTTGCCTTGTTGCTCTTAACCTCATTTCTAATCTTATCCGGTATGTTGTTTAAACGCCAAAAAGCAAATACCATACTGTTGACTGGGCTTAGTGGGAGTGGGAAGACTGTTCTTTTCTATCAACTTCGTGATGGCTCCTCTCATCAAGGTATTGTCACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCCATTCTGAAAAATCAAAGAACGGAAAGTTAAAGCCTGTACATCTTGTTGATGTTCCTGGGCATTCTCACCTTAGACCCAAGCTAGACGAGTTTCTGCCTCAAGCATCTGGTATAGTATTTGTGGTGGATTTTGTGGAGTTTTTACCAAACTGTCGTGCTGCTTTAGAGAGCAACACTGTAGTGAAGAAGAAAATTCATGTTCTTATTCTTAGCAATAAGACAGACAAAGTGACAGCACATACATCAAGAAGTGCAATATCAACAGCTAATATTGTAGATGATTTTACTCTTGGGGTACTGGGAAAACCATTTTCATTCCCTCAATGTCAGAACAAAGTTAAAGTTGATGAAGCTGCTTGTATTACTGGTAACATAACTCAGGTGCAATATATAGTTTATAAGGGACCATGTAAAGTCTTAGGCGTTTCCTCCGAGTTGTTGAATTTGTGGTGCTTCTTCTCTAAGAGTTGGGTTAAATATTGTCATTTGATGATTGAAAATCCTCGACAAAGATGCTCAAAATCATTAAACTTCCTTAGGAAAGCGGAGGAAGGAATTTACATGAAATGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

294

Amino Acids

33.03

Weight (kDa)

9.31

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	54 - 187	2e-12	ADP-ribosylation factor family
SRPRB	PF09439	60 - 185	2.5e-14	Signal recognition particle receptor beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AciI	CCGC	1 cut(s)	854
AcsI	RAATTY	3 cut(s)	501, 751, 864
AfaI	GTAC	2 cut(s)	348, 606
AfiI	CCNNNNNNNGG	2 cut(s)	85, 293
AgsI	TTSAA	5 cut(s)	65, 83, 101, 751, 806
AjnI	CCWGG	1 cut(s)	364
AleI	CACNNNNGTG	1 cut(s)	488
AluBI	AGCT	3 cut(s)	391, 575, 662
AluI	AGCT	3 cut(s)	391, 575, 662
Alw21I	GWGCWC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	467, 662
ApoI	RAATTY	3 cut(s)	501, 751, 864
Asp700I	GAANNNNTTC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	713
AxyI	CCTNAGG	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	454, 649
BccI	CCATC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	1 cut(s)	366
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	486
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	2 cut(s)	468, 663
BlsI	GCNGC	2 cut(s)	469, 664
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	4 cut(s)	90, 253, 285, 714
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	2 cut(s)	210, 617
BmsI	GCATC	2 cut(s)	422, 812
BmuI	ACTGGG	2 cut(s)	210, 617
BoxI	GACNNNNGTC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 293
Bse1I	ACTGG	3 cut(s)	205, 612, 679
Bse21I	CCTNAGG	1 cut(s)	845
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	85, 293
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	3 cut(s)	205, 612, 679
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	454, 649
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	85, 293
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	346
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	854
BspCNI	CTCAG	1 cut(s)	700
BspLI	GGNNCC	4 cut(s)	90, 253, 285, 714
BsrGI	TGTACA	1 cut(s)	346
BsrI	ACTGG	3 cut(s)	205, 612, 679
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	4 cut(s)	195, 226, 461, 487
BstAUI	TGTACA	1 cut(s)	346
BstDEI	CTNAG	7 cut(s)	206, 380, 518, 687, 727, 771, 845
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	366
BstPAI	GACNNNNGTC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	454, 649
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	845
BtsIMutI	CAGTG	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	713
Csp6I	GTAC	2 cut(s)	347, 605
CviAII	CATG	4 cut(s)	71, 506, 717, 871
CviJI	RGCY	6 cut(s)	205, 252, 343, 391, 575, 662
CviKI_1	RGCY	6 cut(s)	205, 252, 343, 391, 575, 662
CviQI	GTAC	2 cut(s)	347, 605
DdeI	CTNAG	7 cut(s)	206, 380, 518, 687, 727, 771, 845
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DraI	TTTAAA	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	713
Eco81I	CCTNAGG	1 cut(s)	845
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	364
FaeI	CATG	4 cut(s)	74, 509, 720, 874
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	4 cut(s)	70, 505, 716, 870
Fnu4HI	GCNGC	2 cut(s)	468, 663
Fsp4HI	GCNGC	2 cut(s)	468, 663
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	2 cut(s)	468, 663
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	4 cut(s)	74, 509, 720, 874
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	316, 639, 742
Hpy188III	TCNNGA	3 cut(s)	48, 245, 555
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	2 cut(s)	89, 854
HpyCH4III	ACNGT	4 cut(s)	195, 226, 461, 487
HpyCH4V	TGCA	2 cut(s)	563, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	7 cut(s)	206, 380, 518, 687, 727, 771, 845
Hsp92II	CATG	4 cut(s)	74, 509, 720, 874
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	257, 312
Lsp1109I	GCAGC	2 cut(s)	454, 649
LweI	GCATC	2 cut(s)	422, 812
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	3 cut(s)	271, 538, 677
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	4 cut(s)	232, 505, 508, 757
MfeI	CAATTG	2 cut(s)	38, 53
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	5 cut(s)	38, 53, 501, 751, 864
MnlI	CCTC	8 cut(s)	148, 265, 286, 417, 639, 748, 822, 850
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	6 cut(s)	134, 168, 338, 648, 783, 836
MslI	CAYNNNNRTG	2 cut(s)	278, 488
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	366
MssI	GTTTAAAC	1 cut(s)	169
MunI	CAATTG	2 cut(s)	38, 53
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	4 cut(s)	74, 509, 720, 874
NlaIV	GGNNCC	4 cut(s)	90, 253, 285, 714
NmuCI	GTSAC	2 cut(s)	271, 538
OliI	CACNNNNGTG	1 cut(s)	488
PctI	GAATGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	469, 664
PmeI	GTTTAAAC	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	90, 253, 285, 714
PspPI	GGNCC	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	348, 606
RsaNI	GTAC	2 cut(s)	347, 605
RseI	CAYNNNNRTG	2 cut(s)	278, 488
SaqAI	TTAA	6 cut(s)	134, 168, 338, 648, 783, 836
SatI	GCNGC	2 cut(s)	468, 663
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	2 cut(s)	422, 812
SfcI	CTRYAG	1 cut(s)	486
SinI	GGWCC	1 cut(s)	713
SmiMI	CAYNNNNRTG	2 cut(s)	278, 488
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	5 cut(s)	38, 53, 501, 751, 864
SsiI	CCGC	1 cut(s)	854
SspI	AATATT	2 cut(s)	580, 788
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	4 cut(s)	195, 226, 461, 487
TaqI	TCGA	2 cut(s)	49, 814
TasI	AATT	5 cut(s)	38, 53, 501, 751, 864
TatI	WGTACW	1 cut(s)	346
Tru1I	TTAA	6 cut(s)	134, 168, 338, 648, 783, 836
Tru9I	TTAA	6 cut(s)	134, 168, 338, 648, 783, 836
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	271, 538
TseI	GCWGC	2 cut(s)	467, 662
Tsp45I	GTSAC	2 cut(s)	271, 538
TspDTI	ATGAA	4 cut(s)	87, 494, 612, 672
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	713
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	3 cut(s)	501, 751, 864
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.