Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

21310962 .. 21314603

Gene Structure 3642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28340.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAGGATTAGAACAATGGAAGAATCATGCAGAGCAATTGTCATCTCAAGTATTACAGCAATGCAAGGAACAGGCAGAGCAATTGTCATCTCAAGCACATGAATACCTTCAGCAGGTTCCACCTGTTCAGATCTATGTTGCTGTTGCCATGTTGCTATTAACCTCATTGTTCCTCTTATCTGGTAGGTTGTTTAAATGCCAAAAAGCTAATACCATACTGTTGACTGGGCTTAGTGGGAGTGGGAAGACTGTTCTTTTCTATCAACTTCGGGATGGCTCCTCTCATCAAGGTACTGTCACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCCATTCTGAAAAATCAAAGAATGGAAAGGTAAAGCCTGTACATCTTGTTGATGTTCCTGGGCATTCTCGCCTTAGACCCAAGCTAGATGAGTTCCTGCCTCAGGCATCTGGGATAGTCTTTGTGGTAGATTCTTTGGAGTTTTTACCGAACTGTCGTTCTGCTTCAGAGTACCTGTATGATATTTTGACCAAGGCAACTGTAGTGAAGAAGAAAATTCCCGTTCTTATTCTCTGCAATAAGGCGGACAAAGTGACTGCACATAGCAAGGAATTTATTCAAAAACAATTGGAGAAGGAACTTGACAAATTACGAGCATCAAGAAGTGCTATATCAACAGCTGATATTGCAAATGATTTTACTCTTGGGGTAATTGGAGAACCATTTTCATTCCCTCAATGTCAGAACAAAGTTAAAGTAGCTGAAGGTGCTGGTATTGATGGTAACTTGATTGAGGTGGAACAGTTTATCAGGGACCATGTAAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

275

Amino Acids

30.38

Weight (kDa)

7.67

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	63 - 222	3.5e-17	ADP-ribosylation factor family
SRPRB	PF09439	69 - 249	6.6e-36	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	73 - 215	2.1e-07	Gtr1/RagA G protein conserved region
Roc	PF08477	73 - 194	5.7e-06	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	549, 605
AcuI	CTGAAG	3 cut(s)	95, 483, 777
AfaI	GTAC	3 cut(s)	295, 375, 506
AfiI	CCNNNNNNNGG	3 cut(s)	115, 320, 436
AgsI	TTSAA	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	4 cut(s)	209, 418, 674, 755
AluI	AGCT	4 cut(s)	209, 418, 674, 755
Alw21I	GWGCWC	1 cut(s)	336
ApoI	RAATTY	2 cut(s)	549, 605
Asp700I	GAANNNNTTC	2 cut(s)	108, 609
AspS9I	GGNCC	1 cut(s)	808
AvaII	GGWCC	1 cut(s)	808
AxyI	CCTNAGG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	336
BccI	CCATC	2 cut(s)	269, 767
BciT130I	CCWGG	1 cut(s)	393
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	808
BmiI	GGNNCC	4 cut(s)	120, 280, 312, 809
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	449, 659
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	33, 78
BsaJI	CCNNGG	2 cut(s)	392, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 320, 436
Bse1I	ACTGG	1 cut(s)	232
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	392, 525
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	115, 320, 436
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	3 cut(s)	115, 320, 436
BsmFI	GGGAC	1 cut(s)	821
BsmI	GAATGC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	578
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	4 cut(s)	120, 280, 312, 809
BspMI	ACCTGC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	392, 525
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	6 cut(s)	222, 253, 298, 488, 535, 798
BstAUI	TGTACA	1 cut(s)	373
BstDEI	CTNAG	4 cut(s)	233, 407, 435, 822
BstENI	CCTNNNNNAGG	2 cut(s)	113, 434
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	680, 761
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	534
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	808
Csp6I	GTAC	3 cut(s)	294, 374, 505
CviAII	CATG	4 cut(s)	29, 101, 151, 812
CviJI	RGCY	7 cut(s)	209, 232, 279, 370, 418, 674, 755
CviKI_1	RGCY	7 cut(s)	209, 232, 279, 370, 418, 674, 755
CviQI	GTAC	3 cut(s)	294, 374, 505
DdeI	CTNAG	4 cut(s)	233, 407, 435, 822
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DraI	TTTAAA	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	3 cut(s)	95, 483, 777
Eco81I	CCTNAGG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	2 cut(s)	113, 434
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	4 cut(s)	32, 104, 154, 815
FaiI	YATR	9 cut(s)	30, 102, 138, 152, 218, 513, 597, 665, 813
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	4 cut(s)	28, 100, 150, 811
FokI	GGATG	1 cut(s)	287
FspBI	CTAG	1 cut(s)	419
Hin1II	CATG	4 cut(s)	32, 104, 154, 815
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	25, 464
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	4 cut(s)	132, 343, 502, 738
Hpy188III	TCNNGA	2 cut(s)	272, 654
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	3 cut(s)	119, 622, 752
HpyCH4III	ACNGT	6 cut(s)	222, 253, 298, 488, 535, 798
HpyCH4V	TGCA	5 cut(s)	32, 66, 570, 593, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	680, 761
HpyF3I	CTNAG	4 cut(s)	233, 407, 435, 822
Hsp92II	CATG	4 cut(s)	32, 104, 154, 815
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	284, 339
LweI	GCATC	2 cut(s)	449, 659
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	3 cut(s)	298, 586, 776
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	4 cut(s)	34, 259, 553, 556
MfeI	CAATTG	3 cut(s)	38, 83, 620
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	7 cut(s)	38, 83, 549, 605, 620, 641, 705
MnlI	CCTC	7 cut(s)	175, 185, 292, 313, 444, 738, 781
MroXI	GAANNNNTTC	2 cut(s)	108, 609
MseI	TTAA	3 cut(s)	161, 195, 747
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	3 cut(s)	38, 83, 620
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	680, 761
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	4 cut(s)	32, 104, 154, 815
NlaIV	GGNNCC	4 cut(s)	120, 280, 312, 809
NmuCI	GTSAC	2 cut(s)	298, 586
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	2 cut(s)	108, 609
PfeI	GAWTC	2 cut(s)	25, 464
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	120, 280, 312, 809
PspPI	GGNCC	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	295, 375, 506
RsaNI	GTAC	3 cut(s)	294, 374, 505
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	161, 195, 747
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	808
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	449, 659
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	48, 93
SmoI	CTYRAG	2 cut(s)	48, 93
Sse9I	AATT	7 cut(s)	38, 83, 549, 605, 620, 641, 705
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	6 cut(s)	222, 253, 298, 488, 535, 798
TasI	AATT	7 cut(s)	38, 83, 549, 605, 620, 641, 705
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	25, 464
Tru1I	TTAA	3 cut(s)	161, 195, 747
Tru9I	TTAA	3 cut(s)	161, 195, 747
TseFI	GTSAC	2 cut(s)	298, 586
Tsp45I	GTSAC	2 cut(s)	298, 586
TspDTI	ATGAA	2 cut(s)	117, 711
VpaK11BI	GGWCC	1 cut(s)	808
XagI	CCTNNNNNAGG	2 cut(s)	113, 434
XapI	RAATTY	2 cut(s)	549, 605
XmnI	GAANNNNTTC	2 cut(s)	108, 609
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.