Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

8229950 .. 8232148

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12080.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAGGATTAGAACTATTGAAGGAATTGGCAGAACAATGGAAGAAACAGGCAGAGCAATGGTCGTCTCACGCCCTTCAATACTTTCATCAGGTTCCACCCGAGCAGATTTATGCTGCTATAGCGGTCTTGCTATTCACCTCATTCTTACTCTTGTTGGTAAGGTTGTTTAAACGCCCAAAAGCTAATACCATACTGCTGAGTGGGCTTAGTGGCAGTGGGAAGACTGTTCTTTTCTATCAACTTCGGGATGGCTCTTCACATCAAGGTACTGTCACTTCCATGGAACCAAATGATGGATATTTTGTGCTCCATTCGGAAAAATCAAAGGGTGGAAAGGCAAATCCTGTTCATCTTATCGATGTTCCTGGGCATTCTCGCCTTAGAGCCCAACTAGATGATTTTCTGCCTCAAGCAGCTGGGATAGTATTTGTGGTTGATGCTTTGGAGTTCTTACCTAATTGCCGTGCTGCTTCTGAGTACCTATATGATATTTTGACTAAGGCGACTGTGGTGAGGAAGAAAATTCCAGTTCTTATTCTCTGCAACAAGACAGACAAAGTAACAGCACATAGCAAGGAATTTATTCGGAAACAACTGGAGAAAGAAATTGAGAAGTTACGGGCATCAAGAAGTGCAATATCAGCAGCTGATATTGCAAACGACTTTACCCTTGGAGTACCTGGCGAAGTATTTTCGTTCTCTCATTGCCAGAACAAAGTTACAGTTGCAGAAGCGTCTGGTCTAACGGGTGAAATATCTCAGGTGGAGCAGTTTGTGAGGGAGCATGTGAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

267

Amino Acids

29.58

Weight (kDa)

8.34

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	296
AciI	CCGC	1 cut(s)	125
AcsI	RAATTY	2 cut(s)	525, 581
AfaI	GTAC	3 cut(s)	271, 482, 681
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	22, 80
AjnI	CCWGG	2 cut(s)	367, 682
AluBI	AGCT	3 cut(s)	185, 419, 650
AluI	AGCT	3 cut(s)	185, 419, 650
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	101
ApeKI	GCWGC	4 cut(s)	116, 416, 470, 647
ApoI	RAATTY	2 cut(s)	525, 581
Asp700I	GAANNNNTTC	1 cut(s)	585
AsuHPI	GGTGA	3 cut(s)	130, 526, 764
AvaI	CYCGRG	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	391
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	4 cut(s)	103, 428, 457, 659
BccI	CCATC	2 cut(s)	245, 290
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	369, 684
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	4 cut(s)	117, 417, 471, 648
BlsI	GCNGC	4 cut(s)	118, 418, 472, 649
Bme1390I	CCNGG	2 cut(s)	369, 684
BmeT110I	CYCGRG	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	96, 288
BmrFI	CCNGG	2 cut(s)	369, 684
BmsI	GCATC	2 cut(s)	430, 635
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	282, 368, 673
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	530, 603
Bse3DI	GCAATG	2 cut(s)	65, 706
BseBI	CCWGG	2 cut(s)	369, 684
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	3 cut(s)	282, 368, 673
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	2 cut(s)	65, 706
BseMII	CTCAG	3 cut(s)	191, 468, 776
BseNI	ACTGG	2 cut(s)	530, 603
BseXI	GCAGC	4 cut(s)	103, 428, 457, 659
BseYI	CCCAGC	1 cut(s)	419
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	373
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	312, 391
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	3 cut(s)	192, 469, 775
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	96, 288
BspQI	GCTCTTC	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	65, 706
BsrI	ACTGG	2 cut(s)	530, 603
BssECI	CCNNGG	3 cut(s)	282, 368, 673
BssT1I	CCWWGG	2 cut(s)	282, 673
Bst2UI	CCWGG	2 cut(s)	369, 684
Bst4CI	ACNGT	4 cut(s)	229, 274, 511, 727
Bst6I	CTCTTC	1 cut(s)	262
BstDEI	CTNAG	7 cut(s)	200, 209, 383, 477, 501, 762, 798
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 205, 644, 656
BstNI	CCWGG	2 cut(s)	369, 684
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	2 cut(s)	367, 682
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	4 cut(s)	103, 428, 457, 659
BstV2I	GAAGAC	1 cut(s)	230
Bsu15I	ATCGAT	1 cut(s)	360
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	3 cut(s)	270, 481, 680
CviAII	CATG	2 cut(s)	283, 788
CviJI	RGCY	6 cut(s)	185, 208, 255, 389, 419, 650
CviKI_1	RGCY	6 cut(s)	185, 208, 255, 389, 419, 650
CviQI	GTAC	3 cut(s)	270, 481, 680
DdeI	CTNAG	7 cut(s)	200, 209, 383, 477, 501, 762, 798
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	282, 673
Eco24I	GRGCYC	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	367, 682
EcoT14I	CCWWGG	2 cut(s)	282, 673
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	2 cut(s)	282, 673
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	2 cut(s)	286, 791
FaiI	YATR	8 cut(s)	114, 122, 194, 284, 487, 489, 573, 789
FatI	CATG	2 cut(s)	282, 787
Fnu4HI	GCNGC	4 cut(s)	117, 417, 471, 648
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	4 cut(s)	117, 417, 471, 648
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	4 cut(s)	117, 417, 471, 648
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	726
Hin1II	CATG	2 cut(s)	286, 791
HphI	GGTGA	3 cut(s)	130, 526, 764
Hpy188I	TCNGA	3 cut(s)	319, 478, 591
Hpy188III	TCNNGA	2 cut(s)	248, 630
HpyAV	CCTTC	2 cut(s)	16, 86
HpyCH4III	ACNGT	4 cut(s)	229, 274, 511, 727
HpyCH4V	TGCA	4 cut(s)	546, 638, 659, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 205, 644, 656
HpyF3I	CTNAG	7 cut(s)	200, 209, 383, 477, 501, 762, 798
Hsp92II	CATG	2 cut(s)	286, 791
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	3 cut(s)	315, 769, 784
Lsp1109I	GCAGC	4 cut(s)	103, 428, 457, 659
LweI	GCATC	2 cut(s)	430, 635
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	4 cut(s)	274, 562, 618, 721
MboII	GAAGA	4 cut(s)	55, 235, 249, 532
MhlI	GDGCHC	2 cut(s)	312, 391
MluCI	AATT	5 cut(s)	26, 460, 525, 581, 609
MnlI	CCTC	4 cut(s)	151, 420, 510, 774
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	419, 650
MspR9I	CCNGG	2 cut(s)	369, 684
MssI	GTTTAAAC	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	369, 684
MwoI	GCNNNNNNNGC	4 cut(s)	122, 205, 644, 656
NcoI	CCATGG	1 cut(s)	282
NlaIII	CATG	2 cut(s)	286, 791
NlaIV	GGNNCC	2 cut(s)	96, 288
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	791
PciSI	GCTCTTC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	585
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	4 cut(s)	118, 418, 472, 649
PmeI	GTTTAAAC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	367, 682
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	2 cut(s)	367, 682
PspN4I	GGNNCC	2 cut(s)	96, 288
PstNI	CAGNNNCTG	1 cut(s)	650
PvuII	CAGCTG	2 cut(s)	419, 650
RsaI	GTAC	3 cut(s)	271, 482, 681
RsaNI	GTAC	3 cut(s)	270, 481, 680
RseI	CAYNNNNRTG	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	4 cut(s)	117, 417, 471, 648
ScrFI	CCNGG	2 cut(s)	369, 684
SduI	GDGCHC	2 cut(s)	312, 391
SfaNI	GCATC	2 cut(s)	430, 635
SfcI	CTRYAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
Sse9I	AATT	5 cut(s)	26, 460, 525, 581, 609
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	367, 682
StyI	CCWWGG	2 cut(s)	282, 673
TaaI	ACNGT	4 cut(s)	229, 274, 511, 727
TaqI	TCGA	1 cut(s)	360
TasI	AATT	5 cut(s)	26, 460, 525, 581, 609
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	4 cut(s)	116, 416, 470, 647
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	2 cut(s)	77, 341
TspRI	CASTG	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	525, 581
XceI	RCATGY	1 cut(s)	791
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.