Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

4845854 .. 4848377

Gene Structure 2524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1037800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAGGATTTGAAGTGGAATGGAAGAAACAGGCACAGCAATGGTGGTCTCAATCCCTTCACTACGTTCATCGCATTCCGCCTCAACAGATTTATGCCGCCATGGCCGTACTGCTATTCACCACGTTTTTGCTCTTACTGGTTAGGTTGTTTAAGCGCCCAAAAGCTAATACGATACTAGTGACTGGGCTTAGCGGCAGTGGCAAGACTGTGCTTTTCTATCAACTTCGGGATGGCTCTTTTCATCAAGGTACTGTCACATCTATGGAACCAAATGAGGGAACTTTTGTGCTTCATTCTGAAAAATCAAAGAATGGAAAGCTAAATCCTATTCATGTTATTAATGTTCCCGGGCATTCTCGCCTTAGAGCCAAACTAGATGATTTCCTCCCTCAAGCTGCTGGTATAGTGTTTGTGGTTGATGCTGTGGAATTCTTACCAAATTGCCGTGCTGCTTCAGAGTACCTGTATGATATTTTGACCAAGGCGAGTGTGGTGAGGAAGAAAATTCCAGTTCTTATTCTCTGCAATAAGACAGACAAAGTGACTGCACATAGCAAGGAATTTATTCGAAAACAATTGGAGAAGGAAATTGACAAATTACGAGCATCAAGAAGTGCAGTATCAACAGCTGATATTACAAATGAGTTTACACTCGGAGCACCTGGAGAACGATTTGCATTTTTGCAGTGTCAAAACAAAGTTACAGTTGGAGAAGCTTCTGGCCTTGGTGGTGAAATTTCCCAGGTGGAGCAATTTATCAGAGATAACGTAAAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

261

Amino Acids

29.13

Weight (kDa)

9.38

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	46 - 209	6.3e-16	ADP-ribosylation factor family
SRPRB	PF09439	55 - 235	1.1e-33	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	59 - 203	1.9e-06	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	80, 99, 195
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	4 cut(s)	431, 507, 563, 738
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	3 cut(s)	111, 253, 464
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	14
AhlI	ACTAGT	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	664, 744
AluBI	AGCT	5 cut(s)	167, 322, 398, 632, 719
AluI	AGCT	5 cut(s)	167, 322, 398, 632, 719
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	105, 724
ApeKI	GCWGC	2 cut(s)	398, 452
ApoI	RAATTY	4 cut(s)	431, 507, 563, 738
AseI	ATTAAT	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	159
AsuC2I	CCSGG	2 cut(s)	351, 352
AsuHPI	GGTGA	3 cut(s)	112, 508, 746
AsuII	TTCGAA	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	2 cut(s)	385, 439
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	2 cut(s)	92, 432
BciT130I	CCWGG	2 cut(s)	666, 746
BcnI	CCSGG	2 cut(s)	351, 352
BcoDI	GTCTC	1 cut(s)	54
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	2 cut(s)	179, 377
BfoI	RGCGCY	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	4 cut(s)	99, 196, 399, 453
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	4 cut(s)	100, 197, 400, 454
Bme1390I	CCNGG	4 cut(s)	351, 352, 666, 746
BmeT110I	CYCGRG	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	4 cut(s)	351, 352, 666, 746
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	412, 617
BmuI	ACTGGG	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	687
Bpu1102I	GCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	351, 352
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	5 cut(s)	102, 350, 483, 727, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	3 cut(s)	144, 190, 512
Bse3DI	GCAATG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	666, 746
BseDI	CCNNGG	5 cut(s)	102, 350, 483, 727, 744
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	47
BseNI	ACTGG	3 cut(s)	144, 190, 512
BseXI	GCAGC	2 cut(s)	385, 439
BsgI	GTGCAG	2 cut(s)	534, 639
BshFI	GGCC	2 cut(s)	107, 726
BsiHKAI	GWGCWC	1 cut(s)	664
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	54
BsmI	GAATGC	2 cut(s)	75, 355
BsnI	GGCC	2 cut(s)	107, 726
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp1720I	GCTNAGC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	3 cut(s)	80, 99, 195
BspANI	GGCC	2 cut(s)	107, 726
BspLI	GGNNCC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	3 cut(s)	144, 190, 512
BssECI	CCNNGG	5 cut(s)	102, 350, 483, 727, 744
BssT1I	CCWWGG	3 cut(s)	102, 483, 727
Bst2UI	CCWGG	2 cut(s)	666, 746
Bst4CI	ACNGT	3 cut(s)	211, 256, 709
BstBI	TTCGAA	1 cut(s)	571
BstDEI	CTNAG	2 cut(s)	191, 365
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 201
BstNI	CCWGG	2 cut(s)	666, 746
BstSCI	CCNGG	4 cut(s)	349, 350, 664, 744
BstV1I	GCAGC	2 cut(s)	385, 439
BsuRI	GGCC	2 cut(s)	107, 726
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	2 cut(s)	205, 695
BtsIMutI	CAGTG	2 cut(s)	205, 695
CfoI	GCGC	1 cut(s)	159
Cfr9I	CCCGGG	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	110, 252, 463
CviAII	CATG	2 cut(s)	103, 335
CviQI	GTAC	3 cut(s)	110, 252, 463
DdeI	CTNAG	2 cut(s)	191, 365
EaeI	YGGCCR	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	102, 483, 727
Eco31I	GGTCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	664, 744
EcoT14I	CCWWGG	3 cut(s)	102, 483, 727
ErhI	CCWWGG	3 cut(s)	102, 483, 727
FaeI	CATG	2 cut(s)	106, 338
FaiI	YATR	7 cut(s)	96, 104, 266, 336, 407, 471, 555
FatI	CATG	2 cut(s)	102, 334
Fnu4HI	GCNGC	4 cut(s)	99, 196, 399, 453
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	4 cut(s)	99, 196, 399, 453
FspBI	CTAG	2 cut(s)	179, 377
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	4 cut(s)	99, 196, 399, 453
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	107, 726
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	106, 338
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	717
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	3 cut(s)	112, 508, 746
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	4 cut(s)	301, 460, 659, 764
Hpy188III	TCNNGA	2 cut(s)	230, 612
Hpy8I	GTNNAC	1 cut(s)	651
HpyAV	CCTTC	2 cut(s)	68, 580
HpyCH4III	ACNGT	3 cut(s)	211, 256, 709
HpyCH4IV	ACGT	3 cut(s)	66, 125, 771
HpyCH4V	TGCA	5 cut(s)	528, 551, 620, 680, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 201
HpyF3I	CTNAG	2 cut(s)	191, 365
HpySE526I	ACGT	3 cut(s)	66, 125, 771
Hsp92II	CATG	2 cut(s)	106, 338
HspAI	GCGC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	659, 751
Lsp1109I	GCAGC	2 cut(s)	385, 439
LweI	GCATC	2 cut(s)	412, 617
MaeI	CTAG	2 cut(s)	179, 377
MaeII	ACGT	3 cut(s)	66, 125, 771
MaeIII	GTNAC	4 cut(s)	181, 256, 544, 703
MboII	GAAGA	2 cut(s)	37, 514
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	9 cut(s)	431, 442, 507, 563, 578, 591, 599, 738, 755
MmeI	TCCRAC	1 cut(s)	691
MnlI	CCTC	5 cut(s)	93, 271, 398, 402, 492
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	2 cut(s)	153, 342
MslI	CAYNNNNRTG	2 cut(s)	40, 263
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	4 cut(s)	351, 352, 666, 746
MunI	CAATTG	1 cut(s)	578
Mva1269I	GAATGC	2 cut(s)	75, 355
MvaI	CCWGG	2 cut(s)	666, 746
MwoI	GCNNNNNNNGC	2 cut(s)	104, 201
NciI	CCSGG	2 cut(s)	351, 352
NcoI	CCATGG	1 cut(s)	102
NlaIII	CATG	2 cut(s)	106, 338
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	3 cut(s)	181, 256, 544
NspV	TTCGAA	1 cut(s)	571
PctI	GAATGC	2 cut(s)	75, 355
PdmI	GAANNNNTTC	1 cut(s)	567
PkrI	GCNGC	4 cut(s)	100, 197, 400, 454
PshBI	ATTAAT	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	664, 744
PspGI	CCWGG	2 cut(s)	664, 744
PspN4I	GGNNCC	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	3 cut(s)	111, 253, 464
RsaNI	GTAC	3 cut(s)	110, 252, 463
RseI	CAYNNNNRTG	2 cut(s)	40, 263
SaqAI	TTAA	2 cut(s)	153, 342
SatI	GCNGC	4 cut(s)	99, 196, 399, 453
ScrFI	CCNGG	4 cut(s)	351, 352, 666, 746
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	412, 617
SfuI	TTCGAA	1 cut(s)	571
SmaI	CCCGGG	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	40, 263
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SpeI	ACTAGT	1 cut(s)	178
Sse9I	AATT	9 cut(s)	431, 442, 507, 563, 578, 591, 599, 738, 755
SsiI	CCGC	3 cut(s)	80, 99, 195
SspMI	CTAG	2 cut(s)	179, 377
StyD4I	CCNGG	4 cut(s)	349, 350, 664, 744
StyI	CCWWGG	3 cut(s)	102, 483, 727
TaaI	ACNGT	3 cut(s)	211, 256, 709
TaiI	ACGT	3 cut(s)	69, 128, 774
TaqI	TCGA	1 cut(s)	571
TasI	AATT	9 cut(s)	431, 442, 507, 563, 578, 591, 599, 738, 755
TauI	GCSGC	2 cut(s)	101, 198
Tru1I	TTAA	2 cut(s)	153, 342
Tru9I	TTAA	2 cut(s)	153, 342
TscAI	CASTG	2 cut(s)	205, 695
TseFI	GTSAC	3 cut(s)	181, 256, 544
TseI	GCWGC	2 cut(s)	398, 452
Tsp45I	GTSAC	3 cut(s)	181, 256, 544
TspDTI	ATGAA	4 cut(s)	59, 233, 284, 323
TspMI	CCCGGG	1 cut(s)	350
TspRI	CASTG	2 cut(s)	205, 695
VspI	ATTAAT	1 cut(s)	342
XapI	RAATTY	4 cut(s)	431, 507, 563, 738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmaI	CCCGGG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	179, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.