Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

3977032 .. 3979110

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03150.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGTACTGCTATTCACCACGTTTTTGCTCTTACTGGTTAGGTTGTTGAAGCGCCCAAAAGCTAATACGATACTAGTGACTGGGCTTAGCGGCAGTCGCAAGACTGTGCTTTTCTATCAAAATGGAAAGGTAAATCCTATTCATGTTATTGATGTTCCTGGGAATTCTCGCCTAGATGATTTCCTACCTCAAGCTGCTGGTATAGTGTTTGTGGTCGATGCTGTGGAATTCTTACCAAATTGCCGTGCTGCTTCAGAGTACCTGTATGATATTTTGACCAAGGCGAGGGTGGTGAGGAAGAAAATTCTAGTTCATATTCTCTGCAATAAGACAGACAAAGTGACGGCACATAGCAAGGAATTTATTCTAAAACAATTGGAGAAGGAAATTGACAAATTACGAGCATCAAGAAGTGCAGTATCAACAGCTGATATTACAAATGAGTTTACGCTCGGAGCACCTGGAGAACGATTTGCATTTTCACAGCGTCAAAACAAAGTTACAGTTGGAGAAGCTTGTGACCTTGGTGGTGAAATTTCCCAGGTGGAGCAATTTATCAGAGATAACATAAAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

194

Amino Acids

21.49

Weight (kDa)

9.43

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	166, 230, 306, 362, 537
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	9, 263
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	52
AhlI	ACTAGT	1 cut(s)	76
AjnI	CCWGG	3 cut(s)	160, 463, 543
AluBI	AGCT	4 cut(s)	65, 197, 431, 518
AluI	AGCT	4 cut(s)	65, 197, 431, 518
Alw21I	GWGCWC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	197, 251
ApoI	RAATTY	5 cut(s)	166, 230, 306, 362, 537
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	10, 307, 545
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	184, 238
BceAI	ACGGC	2 cut(s)	231, 363
BciT130I	CCWGG	3 cut(s)	162, 465, 545
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	3 cut(s)	77, 176, 311
BfoI	RGCGCY	1 cut(s)	58
BisI	GCNGC	3 cut(s)	94, 198, 252
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	3 cut(s)	95, 199, 253
Bme1390I	CCNGG	3 cut(s)	162, 465, 545
BmrFI	CCNGG	3 cut(s)	162, 465, 545
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	2 cut(s)	211, 416
BmuI	ACTGGG	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	161, 282, 526, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	2 cut(s)	42, 88
BseBI	CCWGG	3 cut(s)	162, 465, 545
BseDI	CCNNGG	4 cut(s)	161, 282, 526, 543
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	42, 88
BseXI	GCAGC	2 cut(s)	184, 238
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	463
BslI	CCNNNNNNNGG	1 cut(s)	288
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	42, 88
BssECI	CCNNGG	4 cut(s)	161, 282, 526, 543
BssT1I	CCWWGG	2 cut(s)	282, 526
Bst2UI	CCWGG	3 cut(s)	162, 465, 545
Bst4CI	ACNGT	2 cut(s)	109, 508
BstDEI	CTNAG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	3 cut(s)	162, 465, 545
BstSCI	CCNGG	3 cut(s)	160, 463, 543
BstV1I	GCAGC	2 cut(s)	184, 238
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	8, 262
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	6 cut(s)	5, 65, 88, 197, 431, 518
CviKI_1	RGCY	6 cut(s)	5, 65, 88, 197, 431, 518
CviQI	GTAC	2 cut(s)	8, 262
DdeI	CTNAG	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	282, 526
Eco57I	CTGAAG	1 cut(s)	240
EcoRI	GAATTC	2 cut(s)	166, 230
EcoRII	CCWGG	3 cut(s)	160, 463, 543
EcoT14I	CCWWGG	2 cut(s)	282, 526
ErhI	CCWWGG	2 cut(s)	282, 526
FaeI	CATG	1 cut(s)	149
FaiI	YATR	6 cut(s)	147, 206, 270, 318, 354, 572
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	94, 198, 252
Fsp4HI	GCNGC	3 cut(s)	94, 198, 252
FspBI	CTAG	3 cut(s)	77, 176, 311
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	3 cut(s)	94, 198, 252
GsuI	CTGGAG	1 cut(s)	486
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	516
HphI	GGTGA	3 cut(s)	10, 307, 545
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	3 cut(s)	259, 458, 563
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	2 cut(s)	109, 508
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	327, 419, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	458, 550
Lsp1109I	GCAGC	2 cut(s)	184, 238
LweI	GCATC	2 cut(s)	211, 416
MaeI	CTAG	3 cut(s)	77, 176, 311
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	4 cut(s)	79, 343, 502, 521
MboII	GAAGA	1 cut(s)	313
MfeI	CAATTG	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	3 cut(s)	201, 282, 291
MroXI	GAANNNNTTC	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	431
MspR9I	CCNGG	3 cut(s)	162, 465, 545
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	3 cut(s)	162, 465, 545
MwoI	GCNNNNNNNGC	1 cut(s)	99
NlaIII	CATG	1 cut(s)	149
NmuCI	GTSAC	3 cut(s)	79, 343, 521
PdmI	GAANNNNTTC	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	95, 199, 253
Psp6I	CCWGG	3 cut(s)	160, 463, 543
PspGI	CCWGG	3 cut(s)	160, 463, 543
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	9, 263
RsaNI	GTAC	2 cut(s)	8, 262
SatI	GCNGC	3 cut(s)	94, 198, 252
ScrFI	CCNGG	3 cut(s)	162, 465, 545
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	2 cut(s)	211, 416
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	3 cut(s)	77, 176, 311
StyD4I	CCNGG	3 cut(s)	160, 463, 543
StyI	CCWWGG	2 cut(s)	282, 526
TaaI	ACNGT	2 cut(s)	109, 508
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	219
TauI	GCSGC	1 cut(s)	96
TseFI	GTSAC	3 cut(s)	79, 343, 521
TseI	GCWGC	2 cut(s)	197, 251
Tsp45I	GTSAC	3 cut(s)	79, 343, 521
TspDTI	ATGAA	2 cut(s)	134, 305
XapI	RAATTY	5 cut(s)	166, 230, 306, 362, 537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	3 cut(s)	77, 176, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.