Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

22525881 .. 22533951

Gene Structure 8071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G272800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAAGGATTAGAACAATTGAAGACACAAGCAGGACGATTGAAGAAATTGGCAGGGCAATGGTCATCTCAAGCCCTTGAATATGTTCATCAGGTTCCATCTGAACAGATTTATGCTGCTGTCGCCATCTTGCTATTTACCTCATTTTTACTCTTACTGGTTAGGTTGTTTAAACGCCCAAAAGCTAATACCATACTGCTGACTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTGCGGGATGGCTCTTCTCATCATGGTACTTTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCCATTCTGAAAAATCAAAGAATGGAAAGGAAAATCCTGTTCATCTTATTGATGTTCCTGGGCATTCTCGGCTTAGAGCCAAACTAGACGATGTTCTGCCTCAAGCAGCTGGTATAGTATTTGTGGTTGATGCTTTGGAGTTCTTACCAAATTGCCGTGCCGCTTCAGAGTACCTGTATGATATTTTGACTAAGGTGAGTGTGGTGAGGAAGAAAATTCCAGTTCTTATTCTCTGCAACAAGACAGACAAAGTGACAGCACATAGCAAGGAATTCATTCGAAAACAATTGGAGAAAGAAATTGACAAATTACGTGCATCAAGAAGTGTGATATCAACAGCTGATATTGCAAACGACATTACACTTGGAGTGCCTGGCGAACCATTCTCTTTTTCCCAATGCCAGAACAAAGTTAAAGTTGCAGAAGCTTCTGGTGTAACTGGTGAAATATCTGAGGTGGAGCAGTTTATCAGGGACCATGTGAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

267

Amino Acids

29.39

Weight (kDa)

9.01

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	213, 247, 471
AcsI	RAATTY	2 cut(s)	525, 581
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	271, 482
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	22, 43, 80
AjnI	CCWGG	2 cut(s)	367, 682
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	4 cut(s)	185, 419, 650, 737
AluI	AGCT	4 cut(s)	185, 419, 650, 737
Alw21I	GWGCWC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	116, 416
ApoI	RAATTY	2 cut(s)	525, 581
Asp700I	GAANNNNTTC	2 cut(s)	84, 585
AspS9I	GGNCC	1 cut(s)	784
AsuHPI	GGTGA	3 cut(s)	517, 526, 764
AsuII	TTCGAA	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	103, 428
BccI	CCATC	3 cut(s)	106, 134, 245
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	2 cut(s)	369, 684
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	3 cut(s)	117, 417, 471
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	3 cut(s)	118, 418, 472
Bme1390I	CCNGG	2 cut(s)	369, 684
Bme18I	GGWCC	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	784
BmiI	GGNNCC	3 cut(s)	96, 288, 785
BmrFI	CCNGG	2 cut(s)	369, 684
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	430, 635
BmuI	ACTGGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	589
BpuEI	CTTGAG	2 cut(s)	54, 396
BsaAI	YACGTR	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	4 cut(s)	162, 208, 530, 754
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	369, 684
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	4 cut(s)	162, 208, 530, 754
BseXI	GCAGC	2 cut(s)	103, 428
BsiHKAI	GWGCWC	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	797
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp1720I	GCTNAGC	1 cut(s)	209
BspACI	CCGC	3 cut(s)	213, 247, 471
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	96, 288, 785
BspQI	GCTCTTC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	4 cut(s)	162, 208, 530, 754
BssECI	CCNNGG	1 cut(s)	368
Bst2UI	CCWGG	2 cut(s)	369, 684
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	589
BstDEI	CTNAG	5 cut(s)	209, 383, 501, 762, 798
BstF5I	GGATG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 205, 379, 656
BstNI	CCWGG	2 cut(s)	369, 684
BstSCI	CCNGG	2 cut(s)	367, 682
BstV1I	GCAGC	2 cut(s)	103, 428
BstV2I	GAAGAC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	784
Csp6I	GTAC	2 cut(s)	270, 481
CviAII	CATG	2 cut(s)	266, 788
CviJI	RGCY	9 cut(s)	74, 185, 208, 255, 382, 389, 419, 650, 737
CviKI_1	RGCY	9 cut(s)	74, 185, 208, 255, 382, 389, 419, 650, 737
CviQI	GTAC	2 cut(s)	270, 481
DdeI	CTNAG	5 cut(s)	209, 383, 501, 762, 798
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	367, 682
EcoRV	GATATC	1 cut(s)	642
FaeI	CATG	2 cut(s)	269, 791
FaiI	YATR	8 cut(s)	84, 114, 194, 267, 425, 489, 573, 789
FaqI	GGGAC	1 cut(s)	797
FatI	CATG	2 cut(s)	265, 787
FauI	CCCGC	2 cut(s)	206, 240
Fnu4HI	GCNGC	3 cut(s)	117, 417, 471
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	117, 417, 471
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	3 cut(s)	117, 417, 471
Hin1II	CATG	2 cut(s)	269, 791
HindIII	AAGCTT	1 cut(s)	735
HphI	GGTGA	3 cut(s)	517, 526, 764
Hpy188I	TCNGA	4 cut(s)	103, 319, 478, 763
Hpy188III	TCNNGA	1 cut(s)	630
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	4 cut(s)	546, 626, 659, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 205, 379, 656
HpyF3I	CTNAG	5 cut(s)	209, 383, 501, 762, 798
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	2 cut(s)	269, 791
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	2 cut(s)	315, 769
Lsp1109I	GCAGC	2 cut(s)	103, 428
LweI	GCATC	2 cut(s)	430, 635
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	562, 745
MboII	GAAGA	4 cut(s)	34, 55, 249, 532
MfeI	CAATTG	2 cut(s)	17, 596
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	8 cut(s)	17, 47, 460, 525, 581, 596, 609, 617
MnlI	CCTC	5 cut(s)	151, 289, 420, 510, 757
MroXI	GAANNNNTTC	2 cut(s)	84, 585
MseI	TTAA	2 cut(s)	171, 723
MspA1I	CMGCKG	2 cut(s)	419, 650
MspR9I	CCNGG	2 cut(s)	369, 684
MssI	GTTTAAAC	1 cut(s)	172
MunI	CAATTG	2 cut(s)	17, 596
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	369, 684
MwoI	GCNNNNNNNGC	4 cut(s)	122, 205, 379, 656
NlaIII	CATG	2 cut(s)	269, 791
NlaIV	GGNNCC	3 cut(s)	96, 288, 785
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	562
NspV	TTCGAA	1 cut(s)	589
PciSI	GCTCTTC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	2 cut(s)	84, 585
PkrI	GCNGC	3 cut(s)	118, 418, 472
PmeI	GTTTAAAC	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	623
Psp6I	CCWGG	2 cut(s)	367, 682
PspGI	CCWGG	2 cut(s)	367, 682
PspN4I	GGNNCC	3 cut(s)	96, 288, 785
PspPI	GGNCC	1 cut(s)	784
PvuII	CAGCTG	2 cut(s)	419, 650
RsaI	GTAC	2 cut(s)	271, 482
RsaNI	GTAC	2 cut(s)	270, 481
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	171, 723
SatI	GCNGC	3 cut(s)	117, 417, 471
Sau96I	GGNCC	1 cut(s)	784
ScrFI	CCNGG	2 cut(s)	369, 684
SduI	GDGCHC	1 cut(s)	312
SfaNI	GCATC	2 cut(s)	430, 635
SfuI	TTCGAA	1 cut(s)	589
SinI	GGWCC	1 cut(s)	784
SmlI	CTYRAG	2 cut(s)	69, 411
SmoI	CTYRAG	2 cut(s)	69, 411
Sse9I	AATT	8 cut(s)	17, 47, 460, 525, 581, 596, 609, 617
SsiI	CCGC	3 cut(s)	213, 247, 471
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	367, 682
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	1 cut(s)	589
TasI	AATT	8 cut(s)	17, 47, 460, 525, 581, 596, 609, 617
TauI	GCSGC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	171, 723
Tru9I	TTAA	2 cut(s)	171, 723
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	2 cut(s)	116, 416
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	77, 341, 574
VpaK11BI	GGWCC	1 cut(s)	784
XapI	RAATTY	2 cut(s)	525, 581
XmnI	GAANNNNTTC	2 cut(s)	84, 585
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.