Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

26597339 .. 26599556

Gene Structure 2218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAGGATTCGAAGAATGGAAGAAACGGGCAGATCCATTATGGTTTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACTCAGATCTGTGCTGCTCTTGCCATCTTGCTAGTAACCTCAGTTTTACTCTTATTAGGTAGGTTGTTTAAACGCCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTATGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAAGCCTGTACATCTTGTTGATGTTCCTGGACATTCTCGTCTCAGACCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTATAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCTGCTTCAGAGTACCTGTACGATCTTTTGACCAAGGCAAGTGAGGTGAAGAAGAAAATTCCCATTCTTATTCTTTGCAACAAGACAGACAAAGTAACAGCACATAGCAAGGAGTTCATTCGAAAACAATTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAATATCGACAGCTGATATTGCAAATGACTGTACTCTTGGGGTACTTGGTGAACCATTTTCATTCACTCAGTGTCGGAACAAAGTTACAGTCGCAGAAGCTGCGGGTATTATAGGCGAGATAGCTGAGGTGGAACAGTTCATCAGGGACCATGTAAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

259

Amino Acids

28.77

Weight (kDa)

8.58

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	45 - 207	1e-17	ADP-ribosylation factor family
SRPRB	PF09439	54 - 233	3.6e-35	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	58 - 200	2.8e-08	Gtr1/RagA G protein conserved region
Roc	PF08477	58 - 179	2.4e-06	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	61
AciI	CCGC	3 cut(s)	77, 192, 719
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	428, 504
AcuI	CTGAAG	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	687
AfaI	GTAC	7 cut(s)	62, 250, 330, 461, 467, 649, 660
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	346
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	5 cut(s)	164, 398, 629, 716, 740
AluI	AGCT	5 cut(s)	164, 398, 629, 716, 740
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	716
ApeKI	GCWGC	4 cut(s)	95, 395, 449, 716
ApoI	RAATTY	2 cut(s)	428, 504
ArsI	GACNNNNNNTTYG	2 cut(s)	690, 722
AspS9I	GGNCC	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	233, 505, 677
AsuII	TTCGAA	2 cut(s)	12, 568
AvaII	GGWCC	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	82, 407, 436, 703
BccI	CCATC	2 cut(s)	113, 224
BciT130I	CCWGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	113, 374
BfuAI	ACCTGC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	4 cut(s)	96, 396, 450, 717
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	4 cut(s)	97, 397, 451, 718
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	3 cut(s)	75, 267, 764
BmrFI	CCNGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	409, 614
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	188
Bpu14I	TTCGAA	2 cut(s)	12, 568
BpuEI	CTTGAG	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	244, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	244, 480
BseGI	GGATG	2 cut(s)	235, 424
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	6 cut(s)	98, 135, 170, 376, 698, 732
BseXI	GCAGC	4 cut(s)	82, 407, 436, 703
BsiHKAI	GWGCWC	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	776
Bsp119I	TTCGAA	2 cut(s)	12, 568
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	34, 87, 469
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	3 cut(s)	77, 192, 719
BspCNI	CTCAG	6 cut(s)	97, 134, 171, 375, 697, 733
BspLI	GGNNCC	3 cut(s)	75, 267, 764
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	29
BspT104I	TTCGAA	2 cut(s)	12, 568
BsrGI	TGTACA	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	244, 480
BssMI	GATC	3 cut(s)	34, 87, 469
BssT1I	CCWWGG	2 cut(s)	244, 480
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	5 cut(s)	208, 253, 647, 706, 753
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstAUI	TGTACA	1 cut(s)	328
BstBI	TTCGAA	2 cut(s)	12, 568
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	8 cut(s)	84, 121, 179, 188, 362, 684, 741, 777
BstF5I	GGATG	2 cut(s)	235, 424
BstKTI	GATC	3 cut(s)	37, 90, 472
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	34, 87, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 101, 184, 635, 716
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstV1I	GCAGC	4 cut(s)	82, 407, 436, 703
BstX2I	RGATCY	2 cut(s)	34, 87
BstYI	RGATCY	2 cut(s)	34, 87
BtsCI	GGATG	2 cut(s)	235, 424
BtsIMutI	CAGTG	1 cut(s)	692
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	447
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	763
Csp6I	GTAC	7 cut(s)	61, 249, 329, 460, 466, 648, 659
CviAII	CATG	2 cut(s)	56, 767
CviJI	RGCY	7 cut(s)	164, 187, 325, 398, 629, 716, 740
CviKI_1	RGCY	7 cut(s)	164, 187, 325, 398, 629, 716, 740
CviQI	GTAC	7 cut(s)	61, 249, 329, 460, 466, 648, 659
DdeI	CTNAG	8 cut(s)	84, 121, 179, 188, 362, 684, 741, 777
DpnI	GATC	3 cut(s)	36, 89, 471
DpnII	GATC	3 cut(s)	34, 87, 469
DraI	TTTAAA	1 cut(s)	151
DraIII	CACNNNGTG	1 cut(s)	687
DrdI	GACNNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	244, 480
Eco47I	GGWCC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	244, 480
ErhI	CCWWGG	2 cut(s)	244, 480
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	2 cut(s)	59, 770
FaiI	YATR	8 cut(s)	43, 57, 173, 226, 404, 552, 728, 768
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	2 cut(s)	55, 766
FauI	CCCGC	2 cut(s)	185, 712
Fnu4HI	GCNGC	4 cut(s)	96, 396, 450, 717
FokI	GGATG	2 cut(s)	242, 431
Fsp4HI	GCNGC	4 cut(s)	96, 396, 450, 717
FspBI	CTAG	2 cut(s)	113, 374
GluI	GCNGC	4 cut(s)	96, 396, 450, 717
Hin1II	CATG	2 cut(s)	59, 770
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	3 cut(s)	233, 505, 677
Hpy166II	GTNNAC	1 cut(s)	668
Hpy188I	TCNGA	5 cut(s)	87, 298, 365, 457, 693
Hpy188III	TCNNGA	1 cut(s)	609
Hpy8I	GTNNAC	1 cut(s)	668
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	5 cut(s)	208, 253, 647, 706, 753
HpyCH4V	TGCA	3 cut(s)	525, 617, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 101, 184, 635, 716
HpyF3I	CTNAG	8 cut(s)	84, 121, 179, 188, 362, 684, 741, 777
Hsp92II	CATG	2 cut(s)	59, 770
Kzo9I	GATC	3 cut(s)	34, 87, 469
LpnPI	CCDG	8 cut(s)	56, 333, 339, 360, 384, 398, 476, 745
Lsp1109I	GCAGC	4 cut(s)	82, 407, 436, 703
LweI	GCATC	2 cut(s)	409, 614
MaeI	CTAG	2 cut(s)	113, 374
MaeIII	GTNAC	4 cut(s)	115, 253, 541, 700
MalI	GATC	3 cut(s)	36, 89, 471
MboI	GATC	3 cut(s)	34, 87, 469
MboII	GAAGA	4 cut(s)	26, 34, 508, 511
MfeI	CAATTG	1 cut(s)	575
MflI	RGATCY	2 cut(s)	34, 87
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	6 cut(s)	292, 428, 504, 575, 588, 596
MmeI	TCCRAC	1 cut(s)	671
MnlI	CCTC	5 cut(s)	130, 268, 399, 484, 736
MseI	TTAA	2 cut(s)	150, 320
MspA1I	CMGCKG	2 cut(s)	398, 629
MspR9I	CCNGG	1 cut(s)	348
MssI	GTTTAAAC	1 cut(s)	151
MunI	CAATTG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	5 cut(s)	76, 101, 184, 635, 716
NdeII	GATC	3 cut(s)	34, 87, 469
NlaIII	CATG	2 cut(s)	59, 770
NlaIV	GGNNCC	3 cut(s)	75, 267, 764
NmuCI	GTSAC	1 cut(s)	253
NspV	TTCGAA	2 cut(s)	12, 568
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	4 cut(s)	97, 397, 451, 718
PmeI	GTTTAAAC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	75, 267, 764
PspPI	GGNCC	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	34, 87
PvuII	CAGCTG	2 cut(s)	398, 629
RsaI	GTAC	7 cut(s)	62, 250, 330, 461, 467, 649, 660
RsaNI	GTAC	7 cut(s)	61, 249, 329, 460, 466, 648, 659
SaqAI	TTAA	2 cut(s)	150, 320
SatI	GCNGC	4 cut(s)	96, 396, 450, 717
Sau3AI	GATC	3 cut(s)	34, 87, 469
Sau96I	GGNCC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	2 cut(s)	409, 614
SfuI	TTCGAA	2 cut(s)	12, 568
SinI	GGWCC	1 cut(s)	763
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	6 cut(s)	292, 428, 504, 575, 588, 596
SsiI	CCGC	3 cut(s)	77, 192, 719
SspMI	CTAG	2 cut(s)	113, 374
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	2 cut(s)	244, 480
TaaI	ACNGT	5 cut(s)	208, 253, 647, 706, 753
TaqI	TCGA	3 cut(s)	12, 568, 623
TasI	AATT	6 cut(s)	292, 428, 504, 575, 588, 596
TatI	WGTACW	3 cut(s)	60, 328, 647
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	150, 320
Tru9I	TTAA	2 cut(s)	150, 320
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	4 cut(s)	95, 395, 449, 716
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	553, 666, 745
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	763
XapI	RAATTY	2 cut(s)	428, 504
XspI	CTAG	2 cut(s)	113, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.