Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

54175931 .. 54185214

Gene Structure 9284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG362000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAGGATTAGAACAATGGACGAAACAAGCAGAGCAATTGTCATCTCGAGTGTTACAACAATGGAAGGAACAGGCAGAGCAATTGTCATTTCAAGCACATGAATACCTTCAGCAGGTTCCACTTGTTCAGCAAATCTATGCTGCTGTTGCCTTGTTGCTCTTAACCTCATTTCTAATCTTATCCGGTAGGTTGTTTAAACGCCAAAAAGCTAAATACCATACTGTTGACTGGGCTTACCAACTACTATCCCCAAATGAGGGAACTTTTGTGCTCCATTCTGAAAAATCAAAGAACGGAAAGTTAAAGCCTGCACATCTTGTTGATGTTCCTGGGCATTCTCGCCTTAGACCCAAGTTAGACGAGTTTCTGCCTCAAGCAACTGGTATAGTATTTGTGGTGGATTTTGTGGGGTTTTTACCAAACTGTCGTGCTGCTTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

148

Amino Acids

16.89

Weight (kDa)

8.71

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	95, 423
AfiI	CCNNNNNNNGG	3 cut(s)	115, 259, 260
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw21I	GWGCWC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	143, 434
Asp700I	GAANNNNTTC	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	130, 421
BciT130I	CCWGG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	144, 435
BlsI	GCNGC	2 cut(s)	145, 436
Bme1390I	CCNGG	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	332
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 259, 260
Bse1I	ACTGG	2 cut(s)	236, 388
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	3 cut(s)	115, 259, 260
BseNI	ACTGG	2 cut(s)	236, 388
BseXI	GCAGC	2 cut(s)	130, 421
BsgI	GTGCAG	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	115, 259, 260
BsmI	GAATGC	1 cut(s)	337
BsoBI	CYCGRG	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	236, 388
BssECI	CCNNGG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	226, 428
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	347
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	130, 421
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	312
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	3 cut(s)	212, 236, 310
CviKI_1	RGCY	3 cut(s)	212, 236, 310
DdeI	CTNAG	1 cut(s)	347
DraI	TTTAAA	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	95, 423
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	1 cut(s)	104
FaiI	YATR	4 cut(s)	102, 141, 222, 389
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	144, 435
Fsp4HI	GCNGC	2 cut(s)	144, 435
GluI	GCNGC	2 cut(s)	144, 435
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	283, 442
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	61, 119
HpyCH4III	ACNGT	2 cut(s)	226, 428
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	59, 101, 199, 217, 318, 324, 345, 369
Lsp1109I	GCAGC	2 cut(s)	130, 421
MaeIII	GTNAC	1 cut(s)	54
MfeI	CAATTG	2 cut(s)	38, 83
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	38, 83
MnlI	CCTC	3 cut(s)	178, 253, 384
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	3 cut(s)	164, 198, 305
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	333
MssI	GTTTAAAC	1 cut(s)	199
MunI	CAATTG	2 cut(s)	38, 83
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	48
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	145, 436
PmeI	GTTTAAAC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	164, 198, 305
SatI	GCNGC	2 cut(s)	144, 435
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	5 cut(s)	111, 120, 170, 194, 214
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	48, 375
SmoI	CTYRAG	2 cut(s)	48, 375
Sse9I	AATT	2 cut(s)	38, 83
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	226, 428
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	38, 83
Tru1I	TTAA	3 cut(s)	164, 198, 305
Tru9I	TTAA	3 cut(s)	164, 198, 305
TseI	GCWGC	2 cut(s)	143, 434
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	312
XagI	CCTNNNNNAGG	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.