Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

52236324 .. 52237251

Gene Structure 928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32872

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAAGGATTAGAACAATGGACGAAACAAGCAGAGCAATTGTCATCTCGAGTGTTACAACAATGGAAGGAACAGGCAGAGCAATTGTCATTTCAAGCACATGAATACCTTCAGCAGGTTCCACTTGTTCAGCAAATCTATGCTGCTGTTGCCTTGTTGCTCTTAACCTCATTTCTAATCTTATCCGGTTGTTTAAACGCCAAAAAGCTAAATACCATACTGTTGACTGGGCTTAGTGGGAGTGGGAAGACTGTTCTTTTCTATCAACTTCGTGATGGCTCTTCTCATCAAGGTACTGTCACATCAATGGAACCAAGAAAAAACTTCGCTAACCAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

113

Amino Acids

12.67

Weight (kDa)

7.89

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRPRB	PF09439	69 - 106	8.3e-06	Signal recognition particle receptor beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	95
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	120, 312
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	120, 312
BspMI	ACCTGC	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	222, 253, 298
Bst6I	CTCTTC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	233
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	254
BveI	ACCTGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	4 cut(s)	208, 232, 279, 337
CviKI_1	RGCY	4 cut(s)	208, 232, 279, 337
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	233
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	104
FaiI	YATR	3 cut(s)	102, 141, 218
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	1 cut(s)	144
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	48, 272
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	61, 119
HpyCH4III	ACNGT	3 cut(s)	222, 253, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	104
LguI	GCTCTTC	1 cut(s)	286
LpnPI	CCDG	4 cut(s)	59, 101, 199, 213
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	54, 298
MboII	GAAGA	2 cut(s)	259, 273
MfeI	CAATTG	2 cut(s)	38, 83
MluCI	AATT	2 cut(s)	38, 83
MnlI	CCTC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	164, 194
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	1 cut(s)	186
MssI	GTTTAAAC	1 cut(s)	195
MunI	CAATTG	2 cut(s)	38, 83
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	120, 312
NmuCI	GTSAC	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	145
PmeI	GTTTAAAC	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	120, 312
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	2 cut(s)	164, 194
SatI	GCNGC	1 cut(s)	144
SetI	ASST	5 cut(s)	111, 120, 170, 210, 295
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	38, 83
SspMI	CTAG	1 cut(s)	340
TaaI	ACNGT	3 cut(s)	222, 253, 298
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	38, 83
Tru1I	TTAA	2 cut(s)	164, 194
Tru9I	TTAA	2 cut(s)	164, 194
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	117
XagI	CCTNNNNNAGG	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.