Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000456.1

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

16351 .. 18574

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000456.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggaaggattcgaagaatggaagaaacgggcagagcaatggttatctcaagcattgcgacaatggaagaaacaggcagatccattatggtttcaagcacatgagtacattcagcaggttccgcctactcagatctgtgctgctcttgccatcttgctagtaacctcagttttactcttattaggtaggttgtttaaacgccaaaaagctaataccatattgctgagtgggcttagcgggagtggaaagactgttcttttctatcaactatgggatgggtctgctcaccaaggtactgtgacatcaatggaaccaaatgagggaacttttgtgctcaattctgaaaaatcaaagaatggaaagttaaagcctgtacatcttgttgatgttcctggacattctcgtctcagacccaaactagatgagttcctgcctcaagcagttggtatagtttttgtggtggatgctttggaattcttaccaaacttgcgtgctgcttcagagtacctgtacgatcttttgaccaaggcaagtgtggtgaagaagaaaattcccattcttattctttgcaacaagacagacaaagtaacagcacatagcaaggagttcattcgaaaacaattggagaaggaaattgacaaattacgggcatcaagaagtgcaatatcgacagctgatattgcaaatgactgtactcttggggtacttggtgaaccattttcattcactcagtgtcggaacaaagttacagtcgcagaagctgcgggtattataggcgagatagctgaggtggaacagttcatcagggaccatgtaaagtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

274

Amino Acids

30.65

Weight (kDa)

9.06

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	3 cut(s)	122, 237, 764
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	473, 549
AcuI	CTGAAG	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	732
AfaI	GTAC	7 cut(s)	107, 295, 375, 506, 512, 694, 705
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	4 cut(s)	209, 674, 761, 785
AluI	AGCT	4 cut(s)	209, 674, 761, 785
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	761
ApeKI	GCWGC	3 cut(s)	140, 494, 761
ApoI	RAATTY	2 cut(s)	473, 549
ArsI	GACNNNNNNTTYG	2 cut(s)	735, 767
AspS9I	GGNCC	1 cut(s)	808
AsuHPI	GGTGA	3 cut(s)	278, 550, 722
AsuII	TTCGAA	2 cut(s)	12, 613
AvaII	GGWCC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	127, 481, 748
BccI	CCATC	2 cut(s)	158, 269
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	2 cut(s)	158, 419
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	3 cut(s)	141, 495, 762
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	3 cut(s)	142, 496, 763
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	808
BmiI	GGNNCC	3 cut(s)	120, 312, 809
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	454, 659
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu1102I	GCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	2 cut(s)	12, 613
BpuEI	CTTGAG	2 cut(s)	33, 420
BsaJI	CCNNGG	2 cut(s)	289, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	2 cut(s)	44, 53
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	289, 525
BseGI	GGATG	2 cut(s)	280, 469
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	44, 53
BseMII	CTCAG	6 cut(s)	143, 180, 215, 421, 743, 777
BseXI	GCAGC	3 cut(s)	127, 481, 748
BsiHKAI	GWGCWC	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	821
Bsp119I	TTCGAA	2 cut(s)	12, 613
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	79, 132, 514
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	3 cut(s)	122, 237, 764
BspCNI	CTCAG	6 cut(s)	142, 179, 216, 420, 742, 778
BspLI	GGNNCC	3 cut(s)	120, 312, 809
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	74
BspT104I	TTCGAA	2 cut(s)	12, 613
BsrDI	GCAATG	2 cut(s)	44, 53
BsrGI	TGTACA	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	289, 525
BssMI	GATC	3 cut(s)	79, 132, 514
BssT1I	CCWWGG	2 cut(s)	289, 525
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	5 cut(s)	253, 298, 692, 751, 798
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	373
BstBI	TTCGAA	2 cut(s)	12, 613
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	8 cut(s)	129, 166, 224, 233, 407, 729, 786, 822
BstF5I	GGATG	2 cut(s)	280, 469
BstKTI	GATC	3 cut(s)	82, 135, 517
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	3 cut(s)	79, 132, 514
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 146, 229, 680, 761
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	3 cut(s)	127, 481, 748
BstX2I	RGATCY	2 cut(s)	79, 132
BstYI	RGATCY	2 cut(s)	79, 132
BtsCI	GGATG	2 cut(s)	280, 469
BtsIMutI	CAGTG	1 cut(s)	737
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	492
CaiI	CAGNNNCTG	1 cut(s)	761
Cfr13I	GGNCC	1 cut(s)	808
Csp6I	GTAC	7 cut(s)	106, 294, 374, 505, 511, 693, 704
CviAII	CATG	2 cut(s)	101, 812
CviJI	RGCY	6 cut(s)	209, 232, 370, 674, 761, 785
CviKI_1	RGCY	6 cut(s)	209, 232, 370, 674, 761, 785
CviQI	GTAC	7 cut(s)	106, 294, 374, 505, 511, 693, 704
DdeI	CTNAG	8 cut(s)	129, 166, 224, 233, 407, 729, 786, 822
DpnI	GATC	3 cut(s)	81, 134, 516
DpnII	GATC	3 cut(s)	79, 132, 514
DraI	TTTAAA	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	732
DrdI	GACNNNNNNGTC	1 cut(s)	402
DseDI	GACNNNNNNGTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	289, 525
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	289, 525
ErhI	CCWWGG	2 cut(s)	289, 525
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	2 cut(s)	104, 815
FaiI	YATR	8 cut(s)	88, 102, 218, 271, 449, 597, 773, 813
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	2 cut(s)	100, 811
FauI	CCCGC	2 cut(s)	230, 757
Fnu4HI	GCNGC	3 cut(s)	141, 495, 762
FokI	GGATG	2 cut(s)	287, 476
Fsp4HI	GCNGC	3 cut(s)	141, 495, 762
FspBI	CTAG	2 cut(s)	158, 419
GluI	GCNGC	3 cut(s)	141, 495, 762
Hin1II	CATG	2 cut(s)	104, 815
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	3 cut(s)	278, 550, 722
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	5 cut(s)	132, 343, 410, 502, 738
Hpy188III	TCNNGA	1 cut(s)	654
Hpy8I	GTNNAC	1 cut(s)	713
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	5 cut(s)	253, 298, 692, 751, 798
HpyCH4V	TGCA	3 cut(s)	570, 662, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 146, 229, 680, 761
HpyF3I	CTNAG	8 cut(s)	129, 166, 224, 233, 407, 729, 786, 822
Hsp92II	CATG	2 cut(s)	104, 815
Kzo9I	GATC	3 cut(s)	79, 132, 514
LpnPI	CCDG	8 cut(s)	59, 101, 378, 384, 405, 443, 521, 790
Lsp1109I	GCAGC	3 cut(s)	127, 481, 748
LweI	GCATC	2 cut(s)	454, 659
MaeI	CTAG	2 cut(s)	158, 419
MaeIII	GTNAC	4 cut(s)	160, 298, 586, 745
MalI	GATC	3 cut(s)	81, 134, 516
MboI	GATC	3 cut(s)	79, 132, 514
MboII	GAAGA	5 cut(s)	26, 34, 79, 553, 556
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	2 cut(s)	79, 132
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	4 cut(s)	175, 313, 444, 781
MseI	TTAA	2 cut(s)	195, 365
MspA1I	CMGCKG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	393
MssI	GTTTAAAC	1 cut(s)	196
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	5 cut(s)	121, 146, 229, 680, 761
NdeII	GATC	3 cut(s)	79, 132, 514
NlaIII	CATG	2 cut(s)	104, 815
NlaIV	GGNNCC	3 cut(s)	120, 312, 809
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	2 cut(s)	12, 613
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	142, 496, 763
PmeI	GTTTAAAC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	120, 312, 809
PspPI	GGNCC	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	79, 132
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	7 cut(s)	107, 295, 375, 506, 512, 694, 705
RsaNI	GTAC	7 cut(s)	106, 294, 374, 505, 511, 693, 704
SaqAI	TTAA	2 cut(s)	195, 365
SatI	GCNGC	3 cut(s)	141, 495, 762
Sau3AI	GATC	3 cut(s)	79, 132, 514
Sau96I	GGNCC	1 cut(s)	808
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	454, 659
SfuI	TTCGAA	2 cut(s)	12, 613
SinI	GGWCC	1 cut(s)	808
SmlI	CTYRAG	2 cut(s)	48, 435
SmoI	CTYRAG	2 cut(s)	48, 435
Sse9I	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
SsiI	CCGC	3 cut(s)	122, 237, 764
SspMI	CTAG	2 cut(s)	158, 419
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	289, 525
TaaI	ACNGT	5 cut(s)	253, 298, 692, 751, 798
TaqI	TCGA	3 cut(s)	12, 613, 668
TasI	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
TatI	WGTACW	3 cut(s)	105, 373, 692
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	195, 365
Tru9I	TTAA	2 cut(s)	195, 365
TscAI	CASTG	1 cut(s)	737
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	3 cut(s)	140, 494, 761
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	598, 711, 790
TspRI	CASTG	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	2 cut(s)	473, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XspI	CTAG	2 cut(s)	158, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.