Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

28963205 .. 28972699

Gene Structure 9495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG145000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAAGGATTCGAAGAATCGAAGAAACAGGCAGAGCAATGGTTATCTCAAGCATTGCAACAATGGAAGAAACAGGCAGATCCATTATGGTTTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACTCAGATCTGTGCTGCTCTTGCCATCTTGCTAGTAACCTCAGTTTTACTCTTATTAGGTAGGTTGTTTAAACGCCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAAATCTCAGGACCGGCCCTGGCTTAGTGGGAGTGGAAAGACTGTTCTTTTCTATCAACTATGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAAGCCTGTACATCTTGTTGATGTTCCTGGACATTCTCGTCTCAGACCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTATAGTGTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCTGCCTCAGAGTACCTGTATGATCTTTTGACCAAGGCAAGTGTGGTGAAGAAGAAAATTCCCATTCTTATTCTCTGCAACAAGACAGACAAAGTAATAGCACATAGCAAGGAGTTCATTCGAAAACAATTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAATATCGACAGTTGATATTGCAAATGACTTTACTCTTGGGGTACTTGGCGAACCATTTTTATTCACTCAGTGTCAGAACAAAGTTACAGTTGCAGAAGCTGCGGGTCTTATAGGCGAGATAGCTGAGGTGGAACAGTTTATCAGGGACCATGTAAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

282

Amino Acids

31.56

Weight (kDa)

8.82

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	64 - 228	2.3e-13	ADP-ribosylation factor family
SRPRB	PF09439	86 - 257	4.4e-31	Signal recognition particle receptor beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	2 cut(s)	122, 788
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	497, 573
AdeI	CACNNNGTG	1 cut(s)	756
AfaI	GTAC	5 cut(s)	107, 319, 399, 530, 729
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	251, 415
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	4 cut(s)	209, 467, 785, 809
AluI	AGCT	4 cut(s)	209, 467, 785, 809
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	4 cut(s)	140, 464, 518, 785
ApoI	RAATTY	2 cut(s)	497, 573
AspS9I	GGNCC	3 cut(s)	244, 249, 832
AsuHPI	GGTGA	2 cut(s)	302, 574
AsuII	TTCGAA	2 cut(s)	12, 637
AvaII	GGWCC	2 cut(s)	244, 832
Bbv12I	GWGCWC	1 cut(s)	360
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	4 cut(s)	127, 476, 505, 772
BccI	CCATC	2 cut(s)	158, 293
BciT130I	CCWGG	2 cut(s)	253, 417
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	2 cut(s)	158, 443
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	4 cut(s)	141, 465, 519, 786
BlsI	GCNGC	4 cut(s)	142, 466, 520, 787
Bme1390I	CCNGG	2 cut(s)	253, 417
Bme18I	GGWCC	2 cut(s)	244, 832
BmgT120I	GGNCC	3 cut(s)	244, 249, 832
BmiI	GGNNCC	3 cut(s)	120, 336, 833
BmrFI	CCNGG	2 cut(s)	253, 417
BmsI	GCATC	2 cut(s)	478, 683
Bpu10I	CCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	2 cut(s)	12, 637
BpuEI	CTTGAG	2 cut(s)	33, 444
BsaJI	CCNNGG	3 cut(s)	251, 313, 549
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	44, 53
BseBI	CCWGG	2 cut(s)	253, 417
BseDI	CCNNGG	3 cut(s)	251, 313, 549
BseGI	GGATG	2 cut(s)	304, 493
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	2 cut(s)	44, 53
BseMII	CTCAG	8 cut(s)	143, 180, 215, 254, 445, 537, 767, 801
BseXI	GCAGC	4 cut(s)	127, 476, 505, 772
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	845
BsnI	GGCC	1 cut(s)	250
Bsp119I	TTCGAA	2 cut(s)	12, 637
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	79, 132, 538
BspACI	CCGC	2 cut(s)	122, 788
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	8 cut(s)	142, 179, 216, 253, 444, 536, 766, 802
BspLI	GGNNCC	3 cut(s)	120, 336, 833
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	74
BspT104I	TTCGAA	2 cut(s)	12, 637
BsrDI	GCAATG	2 cut(s)	44, 53
BsrFI	RCCGGY	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	251, 313, 549
BssMI	GATC	3 cut(s)	79, 132, 538
BssT1I	CCWWGG	2 cut(s)	313, 549
Bst2UI	CCWGG	2 cut(s)	253, 417
Bst4CI	ACNGT	5 cut(s)	277, 322, 697, 775, 822
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstAUI	TGTACA	1 cut(s)	397
BstBI	TTCGAA	2 cut(s)	12, 637
BstC8I	GCNNGC	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	304, 493
BstKTI	GATC	3 cut(s)	82, 135, 541
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	79, 132, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 146, 229, 785
BstNI	CCWGG	2 cut(s)	253, 417
BstSCI	CCNGG	2 cut(s)	251, 415
BstV1I	GCAGC	4 cut(s)	127, 476, 505, 772
BstX2I	RGATCY	2 cut(s)	79, 132
BstYI	RGATCY	2 cut(s)	79, 132
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	304, 493
BtsIMutI	CAGTG	1 cut(s)	761
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	516
CaiI	CAGNNNCTG	1 cut(s)	785
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	3 cut(s)	244, 249, 832
Csp6I	GTAC	5 cut(s)	106, 318, 398, 529, 728
CviAII	CATG	2 cut(s)	101, 836
CviJI	RGCY	8 cut(s)	209, 232, 250, 256, 394, 467, 785, 809
CviKI_1	RGCY	8 cut(s)	209, 232, 250, 256, 394, 467, 785, 809
CviQI	GTAC	5 cut(s)	106, 318, 398, 529, 728
DpnI	GATC	3 cut(s)	81, 134, 540
DpnII	GATC	3 cut(s)	79, 132, 538
DraI	TTTAAA	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	756
DrdI	GACNNNNNNGTC	1 cut(s)	426
DseDI	GACNNNNNNGTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	313, 549
Eco47I	GGWCC	2 cut(s)	244, 832
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	251, 415
EcoT14I	CCWWGG	2 cut(s)	313, 549
ErhI	CCWWGG	2 cut(s)	313, 549
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	2 cut(s)	104, 839
FaiI	YATR	9 cut(s)	88, 102, 218, 295, 473, 537, 621, 797, 837
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	2 cut(s)	100, 835
FauI	CCCGC	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	141, 465, 519, 786
FokI	GGATG	2 cut(s)	311, 500
Fsp4HI	GCNGC	4 cut(s)	141, 465, 519, 786
FspBI	CTAG	2 cut(s)	158, 443
GluI	GCNGC	4 cut(s)	141, 465, 519, 786
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	2 cut(s)	104, 839
HinfI	GANTC	2 cut(s)	9, 17
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	302, 574
Hpy188I	TCNGA	5 cut(s)	132, 367, 434, 526, 762
Hpy188III	TCNNGA	2 cut(s)	242, 678
HpyAV	CCTTC	1 cut(s)	646
HpyCH4III	ACNGT	5 cut(s)	277, 322, 697, 775, 822
HpyCH4V	TGCA	5 cut(s)	58, 594, 686, 707, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 146, 229, 785
Hsp92II	CATG	2 cut(s)	104, 839
Kzo9I	GATC	3 cut(s)	79, 132, 538
Lsp1109I	GCAGC	4 cut(s)	127, 476, 505, 772
LweI	GCATC	2 cut(s)	478, 683
MaeI	CTAG	2 cut(s)	158, 443
MaeIII	GTNAC	3 cut(s)	160, 322, 769
MalI	GATC	3 cut(s)	81, 134, 540
MboI	GATC	3 cut(s)	79, 132, 538
MboII	GAAGA	5 cut(s)	26, 34, 79, 577, 580
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	2 cut(s)	79, 132
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	6 cut(s)	361, 497, 573, 644, 657, 665
MnlI	CCTC	5 cut(s)	175, 337, 468, 532, 805
MseI	TTAA	3 cut(s)	195, 234, 389
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	253, 417
MssI	GTTTAAAC	1 cut(s)	196
MunI	CAATTG	1 cut(s)	644
MvaI	CCWGG	2 cut(s)	253, 417
MwoI	GCNNNNNNNGC	4 cut(s)	121, 146, 229, 785
NdeII	GATC	3 cut(s)	79, 132, 538
NlaIII	CATG	2 cut(s)	104, 839
NlaIV	GGNNCC	3 cut(s)	120, 336, 833
NmuCI	GTSAC	1 cut(s)	322
NspV	TTCGAA	2 cut(s)	12, 637
PfeI	GAWTC	2 cut(s)	9, 17
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	4 cut(s)	142, 466, 520, 787
PmeI	GTTTAAAC	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	251, 415
PspGI	CCWGG	2 cut(s)	251, 415
PspN4I	GGNNCC	3 cut(s)	120, 336, 833
PspPI	GGNCC	3 cut(s)	244, 249, 832
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	2 cut(s)	79, 132
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	5 cut(s)	107, 319, 399, 530, 729
RsaNI	GTAC	5 cut(s)	106, 318, 398, 529, 728
SaqAI	TTAA	3 cut(s)	195, 234, 389
SatI	GCNGC	4 cut(s)	141, 465, 519, 786
Sau3AI	GATC	3 cut(s)	79, 132, 538
Sau96I	GGNCC	3 cut(s)	244, 249, 832
ScrFI	CCNGG	2 cut(s)	253, 417
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	2 cut(s)	478, 683
SfuI	TTCGAA	2 cut(s)	12, 637
SinI	GGWCC	2 cut(s)	244, 832
SmlI	CTYRAG	2 cut(s)	48, 459
SmoI	CTYRAG	2 cut(s)	48, 459
Sse9I	AATT	6 cut(s)	361, 497, 573, 644, 657, 665
SsiI	CCGC	2 cut(s)	122, 788
SspMI	CTAG	2 cut(s)	158, 443
StyD4I	CCNGG	2 cut(s)	251, 415
StyI	CCWWGG	2 cut(s)	313, 549
TaaI	ACNGT	5 cut(s)	277, 322, 697, 775, 822
TaqI	TCGA	4 cut(s)	12, 20, 637, 692
TasI	AATT	6 cut(s)	361, 497, 573, 644, 657, 665
TatI	WGTACW	2 cut(s)	105, 397
TfiI	GAWTC	2 cut(s)	9, 17
Tru1I	TTAA	3 cut(s)	195, 234, 389
Tru9I	TTAA	3 cut(s)	195, 234, 389
TscAI	CASTG	1 cut(s)	761
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	4 cut(s)	140, 464, 518, 785
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	761
VpaK11BI	GGWCC	2 cut(s)	244, 832
XapI	RAATTY	2 cut(s)	497, 573
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XspI	CTAG	2 cut(s)	158, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.