Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

8134566 .. 8136646

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGACAACTTGGAAGATTTGAAGATTGTGGCAGAGCAGTGGTCTAAACAAGGACTTGAATTTGTTCAAAAAATACCACCACCTCAGCTTTATACTGCCATTGGTGTTCTCTTATTAGCTACCATTTGGCTCTTATCTATTCGTTTGTTTAGACGTACAAAATCCAATACTGTACTCCTCTCTGGGCTAAGTGGAAGTGGCAAAACAGTTCTCTTCTATCAACTACGAGATGGATCTTCCCATCAGGGTGCTGTAACGTCAATGGAACCGAACGAAGGCACCTTTGTGCTTCACAATGAAAACAACACTAAGAAAGGAAAAGTAAAGCCTGTTCATCTTATTGATGTTCCTGGACACTCTCGGCTTATATCTAAGCTAGAAGAATACTTGCCTCGAGCCGCCGCTGTTGTGTTTGTAGTAGATGCATTGGAGTTCCTCCCAAATATCCGGGCAGCTTCAGAGTACCTTTACGACATTCTGACCAATGCTAGCGTTATTAAGAATAAGACCCCGGTTCTGCTTTGCTGTAACAAGACAGATAAAGTAACTGCACACACCAAAGAGTTCATCCGCAAGCAGATGGAGAAAGAAATAGATAAACTTAGGGTTTCGAGGAGCGCAATATCAACAGCTGATATAGCGAATGACTTCACTCTTGGGATTGAAGGAGAAGTGTTTTCCTTTTCGCATTGCCATAACAAAGTCACGGTCGCTGAGGCGTCTGGACTAACAGGAGAAACAGATCAGGTACAAGAGTTCATCAGAGAACACGTAAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

260

Amino Acids

28.97

Weight (kDa)

7.75

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	59 - 207	1.4e-12	ADP-ribosylation factor family
SRPRB	PF09439	64 - 245	5.3e-34	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	68 - 211	2.2e-06	Gtr1/RagA G protein conserved region
Roc	PF08477	68 - 190	5.3e-06	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	99 - 264	5.7e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	3 cut(s)	399, 402, 571
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	719
AfaI	GTAC	4 cut(s)	157, 174, 464, 750
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	4 cut(s)	22, 59, 68, 665
AjnI	CCWGG	1 cut(s)	349
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	5 cut(s)	88, 119, 376, 455, 632
AluI	AGCT	5 cut(s)	88, 119, 376, 455, 632
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
Asp700I	GAANNNNTTC	2 cut(s)	63, 647
AspLEI	GCGC	1 cut(s)	620
AsuC2I	CCSGG	2 cut(s)	449, 512
AsuNHI	GCTAGC	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	393
BaeI	ACNNNNGTAYC	2 cut(s)	740, 773
BanI	GGYRCC	1 cut(s)	278
BbvCI	CCTCAGC	2 cut(s)	84, 714
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	3 cut(s)	224, 249, 574
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	449, 512
BfaI	CTAG	2 cut(s)	377, 489
BisI	GCNGC	3 cut(s)	399, 402, 453
BlsI	GCNGC	3 cut(s)	400, 403, 454
Bme1390I	CCNGG	3 cut(s)	351, 449, 512
BmeT110I	CYCGRG	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	267, 280
BmrFI	CCNGG	3 cut(s)	351, 449, 512
BmsI	GCATC	1 cut(s)	412
BmtI	GCTAGC	1 cut(s)	492
Bpu10I	CCTNAGC	2 cut(s)	84, 714
BpuMI	CCSGG	2 cut(s)	449, 512
BsaAI	YACGTR	1 cut(s)	772
BsaHI	GRCGYC	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	2 cut(s)	98, 705
BseRI	GAGGAG	2 cut(s)	167, 628
BseXI	GCAGC	1 cut(s)	464
BsgI	GTGCAG	1 cut(s)	534
Bsh1285I	CGRYCG	1 cut(s)	711
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	711
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	448, 512
BslI	CCNNNNNNNGG	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	233, 742
BspACI	CCGC	3 cut(s)	399, 402, 571
BspCNI	CTCAG	2 cut(s)	97, 706
BspLI	GGNNCC	2 cut(s)	267, 280
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	688
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	2 cut(s)	233, 742
BssNI	GRCGYC	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	172, 208, 709
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	719
BstBAI	YACGTR	1 cut(s)	772
BstC8I	GCNNGC	2 cut(s)	490, 575
BstDEI	CTNAG	6 cut(s)	84, 188, 309, 372, 602, 714
BstF5I	GGATG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	2 cut(s)	236, 745
BstMBI	GATC	2 cut(s)	233, 742
BstMCI	CGRYCG	1 cut(s)	711
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	3 cut(s)	349, 447, 510
BstV1I	GCAGC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	490, 575
CfoI	GCGC	1 cut(s)	620
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	4 cut(s)	156, 173, 463, 749
CviAII	CATG	1 cut(s)	780
CviQI	GTAC	4 cut(s)	156, 173, 463, 749
DdeI	CTNAG	6 cut(s)	84, 188, 309, 372, 602, 714
DpnI	GATC	2 cut(s)	235, 744
DpnII	GATC	2 cut(s)	233, 742
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	1 cut(s)	783
FaiI	YATR	5 cut(s)	93, 368, 638, 696, 781
FatI	CATG	1 cut(s)	779
Fnu4HI	GCNGC	3 cut(s)	399, 402, 453
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	399, 402, 453
FspBI	CTAG	2 cut(s)	377, 489
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	3 cut(s)	399, 402, 453
HapII	CCGG	2 cut(s)	448, 512
HgaI	GACGC	1 cut(s)	708
HhaI	GCGC	1 cut(s)	620
Hin1I	GRCGYC	1 cut(s)	719
Hin1II	CATG	1 cut(s)	783
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HpaII	CCGG	2 cut(s)	448, 512
Hpy188I	TCNGA	3 cut(s)	460, 480, 764
Hpy188III	TCNNGA	1 cut(s)	723
HpyAV	CCTTC	2 cut(s)	269, 659
HpyCH4III	ACNGT	3 cut(s)	172, 208, 709
HpyCH4IV	ACGT	3 cut(s)	154, 257, 771
HpyCH4V	TGCA	2 cut(s)	425, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	6 cut(s)	84, 188, 309, 372, 602, 714
HpySE526I	ACGT	3 cut(s)	154, 257, 771
Hsp92I	GRCGYC	1 cut(s)	719
Hsp92II	CATG	1 cut(s)	783
HspAI	GCGC	1 cut(s)	618
Kzo9I	GATC	2 cut(s)	233, 742
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	2 cut(s)	377, 489
MaeII	ACGT	3 cut(s)	154, 257, 771
MaeIII	GTNAC	4 cut(s)	253, 527, 544, 703
MalI	GATC	2 cut(s)	235, 744
MboI	GATC	2 cut(s)	233, 742
MboII	GAAGA	5 cut(s)	26, 34, 205, 228, 392
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	1 cut(s)	59
MnlI	CCTC	6 cut(s)	93, 188, 402, 446, 606, 709
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	2 cut(s)	63, 647
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	246, 284
MspA1I	CMGCKG	2 cut(s)	404, 632
MspI	CCGG	2 cut(s)	448, 512
MspR9I	CCNGG	3 cut(s)	351, 449, 512
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	638
NciI	CCSGG	2 cut(s)	449, 512
NdeII	GATC	2 cut(s)	233, 742
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	1 cut(s)	783
NlaIV	GGNNCC	2 cut(s)	267, 280
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	703
NsiI	ATGCAT	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	393
PdmI	GAANNNNTTC	2 cut(s)	63, 647
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	400, 403, 454
Ppu21I	YACGTR	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	267, 280
PspXI	VCTCGAGB	1 cut(s)	393
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PsuI	RGATCY	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	4 cut(s)	157, 174, 464, 750
RsaNI	GTAC	4 cut(s)	156, 173, 463, 749
RseI	CAYNNNNRTG	2 cut(s)	246, 284
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	3 cut(s)	399, 402, 453
Sau3AI	GATC	2 cut(s)	233, 742
ScrFI	CCNGG	3 cut(s)	351, 449, 512
SfaNI	GCATC	1 cut(s)	412
Sfr274I	CTCGAG	1 cut(s)	393
SlaI	CTCGAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	246, 284
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	3 cut(s)	399, 402, 571
SspMI	CTAG	2 cut(s)	377, 489
StyD4I	CCNGG	3 cut(s)	349, 447, 510
TaaI	ACNGT	3 cut(s)	172, 208, 709
TaiI	ACGT	3 cut(s)	157, 260, 774
TaqI	TCGA	2 cut(s)	394, 611
TasI	AATT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	2 cut(s)	401, 404
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	4 cut(s)	312, 323, 556, 748
TspRI	CASTG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	393
XmnI	GAANNNNTTC	2 cut(s)	63, 647
XspI	CTAG	2 cut(s)	377, 489
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.