Rorug04G0067300

Signal recognition particle receptor subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
10441174 .. 10441353
180 bp
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UTR
Exon/CDS
Intron
Rorug04G0067300.1

Sequence Viewer

Length: 180 bp
ATGCCCACACCCGGCGACGGAGCTCCGCGTGCCGTAACCAAAATCCCCGGCGACGGAATTGGATCGCTCGTCACGAATGTCGTCGAGAAGGTGATGGAGGCGATGCACGCGCCTGTTTACTTCGAGAAGTACGATGTCACCAGCGAGATGCCGAGGGTGCCGGAGGAGGTGATTGAGTAG

Protein Analysis

59

Amino Acids

6.39

Weight (kDa)

4.62

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AccII CGCG 2 cut(s) 28, 110
AciI CCGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 70
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 11, 17, 53
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 25
AlwI GGATC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 12, 48
AsuHPI GGTGA 2 cut(s) 103, 130
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 17
BcnI CCSGG 2 cut(s) 12, 48
Bme1390I CCNGG 2 cut(s) 12, 48
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 12, 48
BmsI GCATC 2 cut(s) 93, 138
BpuMI CCSGG 2 cut(s) 12, 48
BsaJI CCNNGG 2 cut(s) 46, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 17, 53
BseDI CCNNGG 2 cut(s) 46, 152
BseLI CCNNNNNNNGG 3 cut(s) 11, 17, 53
BseRI GAGGAG 1 cut(s) 179
Bsh1236I CGCG 2 cut(s) 28, 110
BshNI GGYRCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 3 cut(s) 12, 48, 161
BslI CCNNNNNNNGG 3 cut(s) 11, 17, 53
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 62
BspACI CCGC 1 cut(s) 26
BspFNI CGCG 2 cut(s) 28, 110
BspLI GGNNCC 1 cut(s) 159
BspPI GGATC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 46, 152
BssMI GATC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 30, 108
BstFNI CGCG 2 cut(s) 28, 110
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMWI GCNNNNNNNGC 3 cut(s) 29, 107, 157
BstSCI CCNGG 2 cut(s) 10, 46
BstUI CGCG 2 cut(s) 28, 110
BtgZI GCGATG 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 30, 108
CfoI GCGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 130
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 25
GlaI GCGC 1 cut(s) 111
HapII CCGG 3 cut(s) 12, 48, 161
HhaI GCGC 1 cut(s) 112
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HpaII CCGG 3 cut(s) 12, 48, 161
HphI GGTGA 2 cut(s) 103, 130
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 73, 85, 124
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 3 cut(s) 20, 56, 86
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 107, 157
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 5 cut(s) 25, 61, 126, 154, 174
LweI GCATC 2 cut(s) 93, 138
MaeIII GTNAC 3 cut(s) 34, 70, 136
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 57
MnlI CCTC 4 cut(s) 91, 147, 157, 160
MspI CCGG 3 cut(s) 12, 48, 161
MspR9I CCNGG 2 cut(s) 12, 48
MvnI CGCG 2 cut(s) 28, 110
MwoI GCNNNNNNNGC 3 cut(s) 29, 107, 157
NciI CCSGG 2 cut(s) 12, 48
NdeII GATC 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 70, 136
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 129
Psp124BI GAGCTC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 159
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 12, 48
SduI GDGCHC 1 cut(s) 25
SetI ASST 3 cut(s) 25, 93, 171
SfaNI GCATC 2 cut(s) 93, 138
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 26
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 10, 46
TaqI TCGA 2 cut(s) 84, 123
TasI AATT 1 cut(s) 57
TseFI GTSAC 2 cut(s) 70, 136
Tsp45I GTSAC 2 cut(s) 70, 136
TspGWI ACGGA 2 cut(s) 33, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.