Rorug02G0196100

Signal recognition particle receptor subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
18270177 .. 18271608
1432 bp
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UTR
Exon/CDS
Intron
Rorug02G0196100.1

Sequence Viewer

Length: 279 bp
ATGAGTTACTACAATCAGCAGCAGGCTCCAGTTGGTGTTCCTCCTCCACAGGGTTATCCTCCAAAGGATGCTTACCCTCCACCTGGATACCCTCAACAAGGATACCCTCCTCAACAGGGGTACCCTCCACAAGGGTATCCTCAGCAGGGCTACCCACAACAAGGGTATCCACCACAACAGGGCTATGCTCAGCCTCCTCCTCACCAGAGCAGCTCTGGTTGCCTTGAAGGATGTCTAGCGGCGCTTTGCTGTTGTTGCATGTTGGATGCTTGCTTCTGA

Protein Analysis

92

Amino Acids

9.95

Weight (kDa)

4.53

Isoelectric Point (pI)

100.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 120
AciI CCGC 1 cut(s) 239
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 19, 210
Asp718I GGTACC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 194
BaeI ACNNNNGTAYC 6 cut(s) 104, 119, 137, 149, 152, 182
BanI GGYRCC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 31, 222
BciT130I CCWGG 1 cut(s) 84
BciVI GTATCC 4 cut(s) 80, 95, 147, 177
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 245
BfuI GTATCC 4 cut(s) 80, 95, 147, 177
BisI GCNGC 3 cut(s) 20, 211, 240
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 3 cut(s) 21, 212, 241
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 27, 122
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 58, 256
BpmI CTGGAG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 141
Bpu1102I GCTNAGC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 73, 236, 271
BseLI CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
BseMII CTCAG 2 cut(s) 155, 203
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 4 cut(s) 33, 99, 186, 189
BseXI GCAGC 2 cut(s) 31, 222
BshNI GGYRCC 1 cut(s) 120
BslI CCNNNNNNNGG 8 cut(s) 50, 83, 98, 116, 131, 146, 161, 179
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 2 cut(s) 154, 202
BspLI GGNNCC 2 cut(s) 27, 122
BspT107I GGYRCC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 24, 271
BstDEI CTNAG 2 cut(s) 141, 189
BstENI CCTNNNNNAGG 2 cut(s) 96, 129
BstF5I GGATG 3 cut(s) 73, 236, 271
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 219, 255
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 31, 222
BsuI GTATCC 4 cut(s) 80, 95, 147, 177
BtsCI GGATG 3 cut(s) 73, 236, 271
Cac8I GCNNGC 2 cut(s) 24, 271
CfoI GCGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 259
CviJI RGCY 5 cut(s) 26, 150, 183, 193, 213
CviKI_1 RGCY 5 cut(s) 26, 150, 183, 193, 213
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 141, 189
EcoNI CCTNNNNNAGG 2 cut(s) 96, 129
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 262
FaiI YATR 2 cut(s) 186, 260
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 3 cut(s) 20, 211, 240
FokI GGATG 2 cut(s) 80, 243
Fsp4HI GCNGC 3 cut(s) 20, 211, 240
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 243
GluI GCNGC 3 cut(s) 20, 211, 240
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 245
HhaI GCGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 255
HpyF3I CTNAG 2 cut(s) 141, 189
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 242
KpnI GGTACC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 2 cut(s) 31, 222
LweI GCATC 2 cut(s) 58, 256
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 219, 255
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 27, 122
NspI RCATGY 1 cut(s) 262
PkrI GCNGC 3 cut(s) 21, 212, 241
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 27, 122
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 3 cut(s) 20, 211, 240
ScrFI CCNGG 1 cut(s) 84
SetI ASST 2 cut(s) 85, 215
SfaNI GCATC 2 cut(s) 58, 256
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 82
TauI GCSGC 1 cut(s) 242
TseI GCWGC 2 cut(s) 19, 210
XagI CCTNNNNNAGG 2 cut(s) 96, 129
XceI RCATGY 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.