Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

39145982 .. 39147313

Gene Structure 1332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAGGATTCAAAGAATGGAAGAAACAGGCAGAGCAATGGTTATCTCAAGCATTGCAACAATGGAAGAAACAGGCAGATCCATTATGGTTTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACCCAGATCTATGCTGCTCTTGCCATCTTGCTAGGAACCTCAGTTTTACTCTTATTAGGTGTGTTGTTTAAATGCCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTCTGAACTATGGGGTGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATCAGGGACCCAGCTATATAAATTCCTCATGTGCTTATATGTATCTTTTTTCAGATCTAACTTATCTAAATGGAAAGTTAAAACCTGTACATCTTGTTGATGTTCCTGGACATTCTTGTCTCAGACCCAAAGTAGATGAGTTCCTGCCTCAAGCAGCTGGTTTAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTACTGCTTCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

179

Amino Acids

19.73

Weight (kDa)

6.41

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRPRB	PF09439	69 - 175	4.3e-12	Signal recognition particle receptor beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	432
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	2 cut(s)	122, 237
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	337, 503
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	4 cut(s)	107, 295, 405, 523
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	13, 95
AjnI	CCWGG	1 cut(s)	421
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	209, 330, 473
AluI	AGCT	3 cut(s)	209, 330, 473
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	140, 470
ApoI	RAATTY	2 cut(s)	337, 503
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	127, 482
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	2 cut(s)	132, 370
BisI	GCNGC	2 cut(s)	141, 471
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	2 cut(s)	142, 472
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	5 cut(s)	120, 163, 312, 324, 325
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	1 cut(s)	484
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	2 cut(s)	33, 450
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	2 cut(s)	44, 53
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	44, 53
BseMII	CTCAG	3 cut(s)	180, 215, 451
BseXI	GCAGC	2 cut(s)	127, 482
BseYI	CCCAGC	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	79, 132, 370
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	2 cut(s)	122, 237
BspCNI	CTCAG	3 cut(s)	179, 216, 450
BspLI	GGNNCC	5 cut(s)	120, 163, 312, 324, 325
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	44, 53
BsrGI	TGTACA	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	79, 132, 370
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	253, 298
BstAUI	TGTACA	1 cut(s)	403
BstDEI	CTNAG	4 cut(s)	166, 224, 233, 437
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	3 cut(s)	82, 135, 373
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	3 cut(s)	79, 132, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 146, 229
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	127, 482
BstX2I	RGATCY	3 cut(s)	79, 132, 370
BstYI	RGATCY	3 cut(s)	79, 132, 370
BtsCI	GGATG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	4 cut(s)	106, 294, 404, 522
CviAII	CATG	2 cut(s)	101, 345
CviJI	RGCY	4 cut(s)	209, 232, 330, 473
CviKI_1	RGCY	4 cut(s)	209, 232, 330, 473
CviQI	GTAC	4 cut(s)	106, 294, 404, 522
DdeI	CTNAG	4 cut(s)	166, 224, 233, 437
DpnI	GATC	3 cut(s)	81, 134, 372
DpnII	GATC	3 cut(s)	79, 132, 370
DraI	TTTAAA	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	432
DseDI	GACNNNNNNGTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	2 cut(s)	104, 348
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	2 cut(s)	100, 344
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	141, 471
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	141, 471
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	141, 471
GsaI	CCCAGC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	104, 348
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	4 cut(s)	265, 370, 440, 532
HpyCH4III	ACNGT	2 cut(s)	253, 298
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 146, 229
HpyF3I	CTNAG	4 cut(s)	166, 224, 233, 437
Hsp92II	CATG	2 cut(s)	104, 348
KflI	GGGWCCC	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	79, 132, 370
Lsp1109I	GCAGC	2 cut(s)	127, 482
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	81, 134, 372
MboI	GATC	3 cut(s)	79, 132, 370
MboII	GAAGA	2 cut(s)	34, 79
MflI	RGATCY	3 cut(s)	79, 132, 370
MluCI	AATT	2 cut(s)	337, 503
MnlI	CCTC	3 cut(s)	175, 352, 474
MseI	TTAA	2 cut(s)	195, 395
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	121, 146, 229
NdeII	GATC	3 cut(s)	79, 132, 370
NlaIII	CATG	2 cut(s)	104, 348
NlaIV	GGNNCC	5 cut(s)	120, 163, 312, 324, 325
NmuCI	GTSAC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	142, 472
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	5 cut(s)	120, 163, 312, 324, 325
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	79, 132, 370
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	4 cut(s)	107, 295, 405, 523
RsaNI	GTAC	4 cut(s)	106, 294, 404, 522
SaqAI	TTAA	2 cut(s)	195, 395
SatI	GCNGC	2 cut(s)	141, 471
Sau3AI	GATC	3 cut(s)	79, 132, 370
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	423
SetI	ASST	8 cut(s)	120, 167, 187, 211, 295, 332, 403, 475
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	48, 465
SmoI	CTYRAG	2 cut(s)	48, 465
Sse9I	AATT	2 cut(s)	337, 503
SsiI	CCGC	2 cut(s)	122, 237
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	253, 298
TasI	AATT	2 cut(s)	337, 503
TatI	WGTACW	2 cut(s)	105, 403
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	195, 395
Tru9I	TTAA	2 cut(s)	195, 395
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	140, 470
Tsp45I	GTSAC	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	2 cut(s)	337, 503
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.