Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

28322194 .. 28326101

Gene Structure 3908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAGGATTCAAAGAATGGAAGAAACAGGCAGAGCAATGGTCATCTCAAGCATTGCAACAATGGAAGAAACAGGCAGAGCCATTATGGTCTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACTCAGATCTATGCTGCCCTTGCCATCTTGCTAGTAACCTCAGTTTTACTCTTATTAGGTAGGTTGTTCAAACGGCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTTCGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAAGCCTGTGCATCTTGTTGATGTTCCTGGACATTCTCGTCTCAGACCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTATAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCTGCTTCAGAGTACCTGTATGATCTTTTGACCAAGGCAAGTGTGGTGAAGAAGAAAATTCCCATTCTTATTCTCTGCAACAAGACAGACAAAGTGACAGCACATAGCAAGGAGTTCATTCGCAAACAATTGGAGAAGGAAATTGACAAATTACGGGCATCAAGGAGTGCAATATCAACAGCTGATATTGCAAATGACTTTACTCTTGGAGTACTTGGTGAACCATTTTCATTCACTCAGTGTCAGAACAAAGTTACAGTTGCAGAAGGTGCGGGTGTTATAGGCGAGGTAGCTGAGGTGGAACGGTTCATCAGGGAACATGTAAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

274

Amino Acids

30.54

Weight (kDa)

9.27

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	60 - 220	7e-18	ADP-ribosylation factor family
SRPRB	PF09439	69 - 249	3.1e-35	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	73 - 215	1e-06	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	3 cut(s)	122, 237, 764
AcsI	RAATTY	2 cut(s)	473, 549
AcuI	CTGAAG	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	732
AfaI	GTAC	4 cut(s)	107, 295, 506, 705
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	811
AgsI	TTSAA	2 cut(s)	13, 196
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	4 cut(s)	209, 443, 674, 785
AluI	AGCT	4 cut(s)	209, 443, 674, 785
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	96, 410
ApeKI	GCWGC	3 cut(s)	140, 440, 494
ApoI	RAATTY	2 cut(s)	473, 549
AsuHPI	GGTGA	3 cut(s)	278, 550, 722
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	127, 452, 481
BccI	CCATC	2 cut(s)	158, 269
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	96, 410
BfaI	CTAG	2 cut(s)	158, 419
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	3 cut(s)	141, 441, 495
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	3 cut(s)	142, 442, 496
BmcAI	AGTACT	1 cut(s)	705
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	120, 312
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	385, 454, 659
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	3 cut(s)	33, 78, 420
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	289, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	2 cut(s)	44, 53
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	289, 525
BseGI	GGATG	2 cut(s)	280, 469
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	2 cut(s)	44, 53
BseMII	CTCAG	6 cut(s)	143, 180, 215, 421, 743, 777
BseXI	GCAGC	3 cut(s)	127, 452, 481
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	96, 410
BsmBI	CGTCTC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	132, 514
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	3 cut(s)	122, 237, 764
BspCNI	CTCAG	6 cut(s)	142, 179, 216, 420, 742, 778
BspLI	GGNNCC	2 cut(s)	120, 312
BspMI	ACCTGC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	44, 53
BssECI	CCNNGG	2 cut(s)	289, 525
BssMI	GATC	2 cut(s)	132, 514
BssT1I	CCWWGG	2 cut(s)	289, 525
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	4 cut(s)	253, 298, 751, 798
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	8 cut(s)	129, 166, 224, 233, 407, 729, 786, 822
BstF5I	GGATG	2 cut(s)	280, 469
BstKTI	GATC	2 cut(s)	135, 517
BstMAI	GTCTC	2 cut(s)	96, 410
BstMBI	GATC	2 cut(s)	132, 514
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 146, 229, 680, 761
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	3 cut(s)	127, 452, 481
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	280, 469
BtsIMutI	CAGTG	1 cut(s)	737
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	492
Csp6I	GTAC	4 cut(s)	106, 294, 505, 704
CviAII	CATG	2 cut(s)	101, 812
CviJI	RGCY	7 cut(s)	82, 209, 232, 370, 443, 674, 785
CviKI_1	RGCY	7 cut(s)	82, 209, 232, 370, 443, 674, 785
CviQI	GTAC	4 cut(s)	106, 294, 505, 704
DdeI	CTNAG	8 cut(s)	129, 166, 224, 233, 407, 729, 786, 822
DpnI	GATC	2 cut(s)	134, 516
DpnII	GATC	2 cut(s)	132, 514
DraIII	CACNNNGTG	1 cut(s)	732
DrdI	GACNNNNNNGTC	1 cut(s)	402
DseDI	GACNNNNNNGTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	289, 525
Eco31I	GGTCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	289, 525
ErhI	CCWWGG	2 cut(s)	289, 525
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	2 cut(s)	104, 815
FaiI	YATR	9 cut(s)	88, 102, 138, 218, 449, 513, 597, 773, 813
FatI	CATG	2 cut(s)	100, 811
FauI	CCCGC	2 cut(s)	230, 757
Fnu4HI	GCNGC	3 cut(s)	141, 441, 495
FokI	GGATG	2 cut(s)	287, 476
Fsp4HI	GCNGC	3 cut(s)	141, 441, 495
FspBI	CTAG	2 cut(s)	158, 419
GluI	GCNGC	3 cut(s)	141, 441, 495
Hin1II	CATG	2 cut(s)	104, 815
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	3 cut(s)	278, 550, 722
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	5 cut(s)	132, 343, 410, 502, 738
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	713
HpyAV	CCTTC	2 cut(s)	622, 752
HpyCH4III	ACNGT	4 cut(s)	253, 298, 751, 798
HpyCH4V	TGCA	6 cut(s)	58, 376, 570, 662, 683, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 146, 229, 680, 761
HpyF3I	CTNAG	8 cut(s)	129, 166, 224, 233, 407, 729, 786, 822
Hsp92II	CATG	2 cut(s)	104, 815
Kzo9I	GATC	2 cut(s)	132, 514
Lsp1109I	GCAGC	3 cut(s)	127, 452, 481
LweI	GCATC	3 cut(s)	385, 454, 659
MaeI	CTAG	2 cut(s)	158, 419
MaeIII	GTNAC	4 cut(s)	160, 298, 586, 745
MalI	GATC	2 cut(s)	134, 516
MboI	GATC	2 cut(s)	132, 514
MboII	GAAGA	4 cut(s)	34, 79, 553, 556
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
MnlI	CCTC	5 cut(s)	175, 313, 444, 772, 781
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	443, 674
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	5 cut(s)	121, 146, 229, 680, 761
NdeII	GATC	2 cut(s)	132, 514
NlaIII	CATG	2 cut(s)	104, 815
NlaIV	GGNNCC	2 cut(s)	120, 312
NmuCI	GTSAC	2 cut(s)	298, 586
NspI	RCATGY	1 cut(s)	815
PciI	ACATGT	1 cut(s)	811
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	142, 442, 496
PscI	ACATGT	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	120, 312
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	2 cut(s)	443, 674
RsaI	GTAC	4 cut(s)	107, 295, 506, 705
RsaNI	GTAC	4 cut(s)	106, 294, 505, 704
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	3 cut(s)	141, 441, 495
Sau3AI	GATC	2 cut(s)	132, 514
ScaI	AGTACT	1 cut(s)	705
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	3 cut(s)	385, 454, 659
SmlI	CTYRAG	3 cut(s)	48, 93, 435
SmoI	CTYRAG	3 cut(s)	48, 93, 435
Sse9I	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
SsiI	CCGC	3 cut(s)	122, 237, 764
SspMI	CTAG	2 cut(s)	158, 419
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	289, 525
TaaI	ACNGT	4 cut(s)	253, 298, 751, 798
TasI	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
TatI	WGTACW	2 cut(s)	105, 703
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	1 cut(s)	737
TseFI	GTSAC	2 cut(s)	298, 586
TseI	GCWGC	3 cut(s)	140, 440, 494
Tsp45I	GTSAC	2 cut(s)	298, 586
TspDTI	ATGAA	3 cut(s)	598, 711, 790
TspRI	CASTG	1 cut(s)	737
XapI	RAATTY	2 cut(s)	473, 549
XceI	RCATGY	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XspI	CTAG	2 cut(s)	158, 419
ZrmI	AGTACT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.