Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

3557354 .. 3560745

Gene Structure 3392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAGGATTAGAACAATGGAAGGTGCTGGCAGAACAATGGAAGAAACAGGCAGAGAAATGGTCGTCGCAAGCCCTTGAACACATTCAGGCAGAGAAATGGTCGTCTCAAGCCCTCGAATACATTCATCAGGTTCCACCTGAGCAGATTTATGCTGCAATCGCCATCTTGATATTCACATCATTTTTACTCATATTGGTTAGGTTGTTTAAACGCCCTAAAGCTAATACCATACTGCTGAGTGGGCTTAGCGGGAGTGGGAAGACTCTTCTTTTCTATCAACTTCGGGATGGCTCTTCTCATCAAGGTACTGTCACATCTATGGAACCAAATGAGGGAACTTTTGTGCTCCATTCTGAAAAATCCAAGAACGGAAAGGTAAATCCTGTTCATCTTGTTGATGTTCCTGGGCATTCTCGCCTTAGAGCCAAACTAGATGATTTCCTACCTCAAGCCGCAGGTATAGTATTTGTGGTTGATGCTTTGGAGTTCTTACCAAATTGCCGTGCTGCTTCAGAGTACTTATATGATATTTTGACCAAGGCTAGTGTGGTGAGGAAGAAAATTCCAGTTCTTATTCTCTGCAACAAGACAGACAAAGTGACAGCACATAGCAAGGAATTTATTCGAAAACAGTTGGAGAAGGAAATTGACAAATTACGAGCATCAAGAAGTGCAATATCAGCAGCTGATATTGCAAATGACTTTACACTTGGAGTACCTGGCGAACCATTTTCATTCCATCAGTGCCAGAACAAAGTTACAGTTGCAGAAGCTTCTGGTCTAACGGGTGACGTATCTCAGGTGGAGCAATTTATCAGGGACCATGTGAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

280

Amino Acids

31.14

Weight (kDa)

8.63

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	449
AciI	CCGC	2 cut(s)	252, 456
AcsI	RAATTY	2 cut(s)	564, 620
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	3 cut(s)	310, 521, 720
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	406, 721
AluBI	AGCT	3 cut(s)	224, 689, 776
AluI	AGCT	3 cut(s)	224, 689, 776
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	689
ApeKI	GCWGC	3 cut(s)	155, 509, 686
ApoI	RAATTY	2 cut(s)	564, 620
Asp700I	GAANNNNTTC	3 cut(s)	84, 123, 624
AspS9I	GGNCC	1 cut(s)	823
AsuHPI	GGTGA	2 cut(s)	565, 803
AsuII	TTCGAA	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	823
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	3 cut(s)	142, 496, 698
BccI	CCATC	3 cut(s)	173, 284, 750
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	2 cut(s)	408, 723
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	434, 546
BfuAI	ACCTGC	1 cut(s)	449
BisI	GCNGC	4 cut(s)	156, 456, 510, 687
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	4 cut(s)	157, 457, 511, 688
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	408, 723
Bme18I	GGWCC	1 cut(s)	823
BmgT120I	GGNCC	1 cut(s)	823
BmiI	GGNNCC	3 cut(s)	135, 327, 824
BmrFI	CCNGG	2 cut(s)	408, 723
BmsI	GCATC	2 cut(s)	469, 674
BpiI	GAAGAC	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	628
BpuEI	CTTGAG	2 cut(s)	93, 435
BsaJI	CCNNGG	2 cut(s)	407, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	408, 723
BseDI	CCNNGG	2 cut(s)	407, 540
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	3 cut(s)	132, 230, 815
BseNI	ACTGG	1 cut(s)	569
BseXI	GCAGC	3 cut(s)	142, 496, 698
BsiHKAI	GWGCWC	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	836
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	836
BsmI	GAATGC	1 cut(s)	412
Bsp119I	TTCGAA	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	2 cut(s)	252, 456
BspCNI	CTCAG	3 cut(s)	133, 231, 814
BspLI	GGNNCC	3 cut(s)	135, 327, 824
BspMI	ACCTGC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	628
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	407, 540
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	408, 723
Bst4CI	ACNGT	3 cut(s)	313, 636, 766
Bst6I	CTCTTC	2 cut(s)	273, 301
BstBI	TTCGAA	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	30, 72
BstDEI	CTNAG	6 cut(s)	141, 239, 248, 422, 801, 837
BstF5I	GGATG	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 244, 683, 695
BstNI	CCWGG	2 cut(s)	408, 723
BstSCI	CCNGG	2 cut(s)	406, 721
BstV1I	GCAGC	3 cut(s)	142, 496, 698
BstV2I	GAAGAC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	752
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	30, 72
CaiI	CAGNNNCTG	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	823
Csp6I	GTAC	3 cut(s)	309, 520, 719
CviAII	CATG	1 cut(s)	827
CviQI	GTAC	3 cut(s)	309, 520, 719
DdeI	CTNAG	6 cut(s)	141, 239, 248, 422, 801, 837
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	273, 301
EarI	CTCTTC	2 cut(s)	273, 301
Eco130I	CCWWGG	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	498
EcoRII	CCWGG	2 cut(s)	406, 721
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	1 cut(s)	830
FaiI	YATR	9 cut(s)	153, 194, 233, 323, 464, 526, 528, 612, 828
FaqI	GGGAC	1 cut(s)	836
FatI	CATG	1 cut(s)	826
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	4 cut(s)	156, 456, 510, 687
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	4 cut(s)	156, 456, 510, 687
FspBI	CTAG	2 cut(s)	434, 546
GluI	GCNGC	4 cut(s)	156, 456, 510, 687
Hin1II	CATG	1 cut(s)	830
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	1 cut(s)	265
HphI	GGTGA	2 cut(s)	565, 803
Hpy188I	TCNGA	2 cut(s)	358, 517
Hpy188III	TCNNGA	3 cut(s)	169, 287, 669
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	16, 637
HpyCH4III	ACNGT	3 cut(s)	313, 636, 766
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	5 cut(s)	158, 585, 677, 698, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 244, 683, 695
HpyF3I	CTNAG	6 cut(s)	141, 239, 248, 422, 801, 837
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	1 cut(s)	830
LguI	GCTCTTC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	354, 808
Lsp1109I	GCAGC	3 cut(s)	142, 496, 698
LweI	GCATC	2 cut(s)	469, 674
MaeI	CTAG	2 cut(s)	434, 546
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	4 cut(s)	313, 601, 760, 791
MboII	GAAGA	5 cut(s)	55, 260, 274, 288, 571
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	6 cut(s)	499, 564, 620, 648, 656, 812
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	4 cut(s)	125, 328, 459, 549
MroXI	GAANNNNTTC	3 cut(s)	84, 123, 624
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	689
MspR9I	CCNGG	2 cut(s)	408, 723
MssI	GTTTAAAC	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	412
MvaI	CCWGG	2 cut(s)	408, 723
MwoI	GCNNNNNNNGC	4 cut(s)	161, 244, 683, 695
NlaIII	CATG	1 cut(s)	830
NlaIV	GGNNCC	3 cut(s)	135, 327, 824
NmuCI	GTSAC	3 cut(s)	313, 601, 791
NspV	TTCGAA	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	301
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	3 cut(s)	84, 123, 624
PkrI	GCNGC	4 cut(s)	157, 457, 511, 688
PleI	GAGTC	1 cut(s)	259
PmeI	GTTTAAAC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	406, 721
PspGI	CCWGG	2 cut(s)	406, 721
PspN4I	GGNNCC	3 cut(s)	135, 327, 824
PspPI	GGNCC	1 cut(s)	823
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PstNI	CAGNNNCTG	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	3 cut(s)	310, 521, 720
RsaNI	GTAC	3 cut(s)	309, 520, 719
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	4 cut(s)	156, 456, 510, 687
Sau96I	GGNCC	1 cut(s)	823
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	408, 723
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	2 cut(s)	469, 674
SfuI	TTCGAA	1 cut(s)	628
SinI	GGWCC	1 cut(s)	823
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	108, 450
SmoI	CTYRAG	2 cut(s)	108, 450
Sse9I	AATT	6 cut(s)	499, 564, 620, 648, 656, 812
SsiI	CCGC	2 cut(s)	252, 456
SspMI	CTAG	2 cut(s)	434, 546
StyD4I	CCNGG	2 cut(s)	406, 721
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	313, 636, 766
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	2 cut(s)	117, 628
TasI	AATT	6 cut(s)	499, 564, 620, 648, 656, 812
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	752
TseFI	GTSAC	3 cut(s)	313, 601, 791
TseI	GCWGC	3 cut(s)	155, 509, 686
Tsp45I	GTSAC	3 cut(s)	313, 601, 791
TspDTI	ATGAA	3 cut(s)	116, 380, 726
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	2 cut(s)	564, 620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmnI	GAANNNNTTC	3 cut(s)	84, 123, 624
XspI	CTAG	2 cut(s)	434, 546
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.