Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

33371700 .. 33373011

Gene Structure 1312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGGATTCGAAGAATGGAAGAAACAGGCAGAGCAATGGTCATCTCAAGCATTGCAACAATGGAAGAAACAGGTAGAGCCATTATGGTCTCAAGCACATGAGTACATTCAGCAGGTTCCACCTTCTCAAATCTATGATGCTCTTGCCATCTTGCTAGTAACCTCAGTTTTACCCTTATTAGGTAGGTTGTTCAAACGGCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTTCGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAAGCCTGTGCATCTTGTTGATGTTCCTGGACATTCTCGTATCAGACCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTATAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCTTCTTTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

7.97

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	60 - 157	3.5e-10	ADP-ribosylation factor family
SRPRB	PF09439	69 - 157	3.1e-14	Signal recognition particle receptor beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	473
AfaI	GTAC	2 cut(s)	107, 295
AfiI	CCNNNNNNNGG	2 cut(s)	182, 320
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	2 cut(s)	209, 443
AluI	AGCT	2 cut(s)	209, 443
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	2 cut(s)	158, 269
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	158, 419
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	441
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	120, 312
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	130, 385, 454
Bpu1102I	GCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	3 cut(s)	33, 78, 420
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 320
Bse3DI	GCAATG	2 cut(s)	44, 53
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	280, 469
BseLI	CCNNNNNNNGG	2 cut(s)	182, 320
BseMI	GCAATG	2 cut(s)	44, 53
BseMII	CTCAG	2 cut(s)	180, 215
BseXI	GCAGC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	182, 320
BsmAI	GTCTC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	179, 216
BspLI	GGNNCC	2 cut(s)	120, 312
BspMI	ACCTGC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	44, 53
BssECI	CCNNGG	1 cut(s)	289
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	253, 298
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	166, 224, 233
BstF5I	GGATG	2 cut(s)	280, 469
BstMAI	GTCTC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	280, 469
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	106, 294
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	5 cut(s)	82, 209, 232, 370, 443
CviKI_1	RGCY	5 cut(s)	82, 209, 232, 370, 443
CviQI	GTAC	2 cut(s)	106, 294
DdeI	CTNAG	3 cut(s)	166, 224, 233
Eco130I	CCWWGG	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	104
FaiI	YATR	5 cut(s)	88, 102, 138, 218, 449
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	2 cut(s)	287, 476
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	158, 419
GluI	GCNGC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	343, 410
Hpy188III	TCNNGA	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	253, 298
HpyCH4V	TGCA	2 cut(s)	58, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	3 cut(s)	166, 224, 233
Hsp92II	CATG	1 cut(s)	104
LpnPI	CCDG	8 cut(s)	14, 59, 101, 378, 384, 405, 429, 443
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	3 cut(s)	130, 385, 454
MaeI	CTAG	2 cut(s)	158, 419
MaeIII	GTNAC	2 cut(s)	160, 298
MboII	GAAGA	3 cut(s)	26, 34, 79
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	337, 473
MnlI	CCTC	3 cut(s)	175, 313, 444
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	120, 312
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	120, 312
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	107, 295
RsaNI	GTAC	2 cut(s)	106, 294
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	9 cut(s)	78, 120, 127, 167, 187, 191, 211, 295, 445
SfaNI	GCATC	3 cut(s)	130, 385, 454
SfuI	TTCGAA	1 cut(s)	12
SmlI	CTYRAG	3 cut(s)	48, 93, 435
SmoI	CTYRAG	3 cut(s)	48, 93, 435
Sse9I	AATT	2 cut(s)	337, 473
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	158, 419
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	253, 298
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	337, 473
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	473
XspI	CTAG	2 cut(s)	158, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.