Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

22141141 .. 22143244

Gene Structure 2104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG131500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAGGATTCGAAGAATGGAAGAAACGGGCAGAGCAATGGTTATCTCAAGCATTGCGACAATGGAAGAAACAGGCAGATCCATTATGGTTTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACTCAGATCTGTGCTGCTCTTGCCATCTTGCTAGTAACCTCAGTTTTACTCTTATTAGGTAGGTTGTTTAAACGCCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTATGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAAGCCTGTACATCTTGTTGATGTTCCTGGACATTCTCGTCTCAGACCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTATAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGTGTGCTGCTTCAGAGTACCTGTACGATCTTTTGACCAAGGCAAGTGTGGTGAAGAAGAAAATTCCCATTCTTATTCTTTGCAACAAGACGGACAAAGTAACAGCACATTGCAAGGAGTTCATTCGAAAACAATTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAATATCGACAGCTGATATTGCAAATGACTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

232

Amino Acids

26.13

Weight (kDa)

9.13

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	60 - 218	2e-16	ADP-ribosylation factor family
SRPRB	PF09439	69 - 221	5.1e-33	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	73 - 215	5.4e-07	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	2 cut(s)	122, 237
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	473, 549
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	5 cut(s)	107, 295, 375, 506, 512
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	3 cut(s)	209, 443, 674
AluI	AGCT	3 cut(s)	209, 443, 674
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	140, 440, 494
ApoI	RAATTY	2 cut(s)	473, 549
AsuHPI	GGTGA	2 cut(s)	278, 550
AsuII	TTCGAA	2 cut(s)	12, 613
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	3 cut(s)	127, 452, 481
BccI	CCATC	2 cut(s)	158, 269
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	2 cut(s)	158, 419
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	3 cut(s)	141, 441, 495
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	3 cut(s)	142, 442, 496
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	120, 312
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	454, 659
Bpu1102I	GCTNAGC	1 cut(s)	233
Bpu14I	TTCGAA	2 cut(s)	12, 613
BpuEI	CTTGAG	2 cut(s)	33, 420
BsaJI	CCNNGG	2 cut(s)	289, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	3 cut(s)	44, 53, 595
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	289, 525
BseGI	GGATG	2 cut(s)	280, 469
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	3 cut(s)	44, 53, 595
BseMII	CTCAG	4 cut(s)	143, 180, 215, 421
BseXI	GCAGC	3 cut(s)	127, 452, 481
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
Bsp119I	TTCGAA	2 cut(s)	12, 613
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	79, 132, 514
Bsp1720I	GCTNAGC	1 cut(s)	233
BspACI	CCGC	2 cut(s)	122, 237
BspCNI	CTCAG	4 cut(s)	142, 179, 216, 420
BspLI	GGNNCC	2 cut(s)	120, 312
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	74
BspT104I	TTCGAA	2 cut(s)	12, 613
BsrDI	GCAATG	3 cut(s)	44, 53, 595
BsrGI	TGTACA	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	289, 525
BssMI	GATC	3 cut(s)	79, 132, 514
BssT1I	CCWWGG	2 cut(s)	289, 525
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	3 cut(s)	253, 298, 692
BstAUI	TGTACA	1 cut(s)	373
BstBI	TTCGAA	2 cut(s)	12, 613
BstDEI	CTNAG	5 cut(s)	129, 166, 224, 233, 407
BstF5I	GGATG	2 cut(s)	280, 469
BstKTI	GATC	3 cut(s)	82, 135, 517
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	3 cut(s)	79, 132, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 146, 229, 680
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	3 cut(s)	127, 452, 481
BstX2I	RGATCY	2 cut(s)	79, 132
BstYI	RGATCY	2 cut(s)	79, 132
BtsCI	GGATG	2 cut(s)	280, 469
BveI	ACCTGC	1 cut(s)	106
Csp6I	GTAC	5 cut(s)	106, 294, 374, 505, 511
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	5 cut(s)	209, 232, 370, 443, 674
CviKI_1	RGCY	5 cut(s)	209, 232, 370, 443, 674
CviQI	GTAC	5 cut(s)	106, 294, 374, 505, 511
DdeI	CTNAG	5 cut(s)	129, 166, 224, 233, 407
DpnI	GATC	3 cut(s)	81, 134, 516
DpnII	GATC	3 cut(s)	79, 132, 514
DraI	TTTAAA	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	402
DseDI	GACNNNNNNGTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	289, 525
Eco57I	CTGAAG	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	289, 525
ErhI	CCWWGG	2 cut(s)	289, 525
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	1 cut(s)	104
FaiI	YATR	5 cut(s)	88, 102, 218, 271, 449
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	3 cut(s)	141, 441, 495
FokI	GGATG	2 cut(s)	287, 476
Fsp4HI	GCNGC	3 cut(s)	141, 441, 495
FspBI	CTAG	2 cut(s)	158, 419
GluI	GCNGC	3 cut(s)	141, 441, 495
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	2 cut(s)	278, 550
Hpy188I	TCNGA	4 cut(s)	132, 343, 410, 502
Hpy188III	TCNNGA	1 cut(s)	654
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	3 cut(s)	253, 298, 692
HpyCH4V	TGCA	4 cut(s)	570, 600, 662, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 146, 229, 680
HpyF3I	CTNAG	5 cut(s)	129, 166, 224, 233, 407
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	79, 132, 514
LpnPI	CCDG	8 cut(s)	59, 101, 378, 384, 405, 429, 443, 521
Lsp1109I	GCAGC	3 cut(s)	127, 452, 481
LweI	GCATC	2 cut(s)	454, 659
MaeI	CTAG	2 cut(s)	158, 419
MaeIII	GTNAC	3 cut(s)	160, 298, 586
MalI	GATC	3 cut(s)	81, 134, 516
MboI	GATC	3 cut(s)	79, 132, 514
MboII	GAAGA	5 cut(s)	26, 34, 79, 553, 556
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	2 cut(s)	79, 132
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
MnlI	CCTC	3 cut(s)	175, 313, 444
MseI	TTAA	2 cut(s)	195, 365
MspA1I	CMGCKG	2 cut(s)	443, 674
MspR9I	CCNGG	1 cut(s)	393
MssI	GTTTAAAC	1 cut(s)	196
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	121, 146, 229, 680
NdeII	GATC	3 cut(s)	79, 132, 514
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	120, 312
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	2 cut(s)	12, 613
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	142, 442, 496
PmeI	GTTTAAAC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	120, 312
PsuI	RGATCY	2 cut(s)	79, 132
PvuII	CAGCTG	2 cut(s)	443, 674
RsaI	GTAC	5 cut(s)	107, 295, 375, 506, 512
RsaNI	GTAC	5 cut(s)	106, 294, 374, 505, 511
SaqAI	TTAA	2 cut(s)	195, 365
SatI	GCNGC	3 cut(s)	141, 441, 495
Sau3AI	GATC	3 cut(s)	79, 132, 514
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	9 cut(s)	120, 167, 187, 191, 211, 295, 445, 510, 676
SfaNI	GCATC	2 cut(s)	454, 659
SfuI	TTCGAA	2 cut(s)	12, 613
SmlI	CTYRAG	2 cut(s)	48, 435
SmoI	CTYRAG	2 cut(s)	48, 435
Sse9I	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
SsiI	CCGC	2 cut(s)	122, 237
SspMI	CTAG	2 cut(s)	158, 419
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	289, 525
TaaI	ACNGT	3 cut(s)	253, 298, 692
TaqI	TCGA	3 cut(s)	12, 613, 668
TasI	AATT	6 cut(s)	337, 473, 549, 620, 633, 641
TatI	WGTACW	2 cut(s)	105, 373
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	2 cut(s)	195, 365
Tru9I	TTAA	2 cut(s)	195, 365
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	3 cut(s)	140, 440, 494
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	598
TspGWI	ACGGA	1 cut(s)	593
XapI	RAATTY	2 cut(s)	473, 549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XspI	CTAG	2 cut(s)	158, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.