Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Reverse (-)

1695717 .. 1698191

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGAACTTGGAAGATCTGAAAATTCTGGCTGAGCAGTGGTCGCATCAAGGAATTGAATATCTTCAGAAGATACCACCGAATCAGCTGTATGCCGCCATTGGTGTTTTGTTGTTTACAACCATCTTGCTCTTCCTATCCATTCGCCTGGTCAGACGTACCAAATCCAACACTGTACTCCTTTCTGGGCTGACCGGAAGTGGAAAGACTGTGCTCTTTTACCAACTCCGAGATGGATCGTCGCATCAGGGCACTGTAACATCAATGGAACCAAATGAAGGCACTTTTGTTCTTCACAGTGAAAATACTAAGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGACCCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCCATTGTGTTCGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTACCTATACGAGATTCTGACCAATGCGAATGTTGTCAAGAAGAAGATTCCAGTCCTCCTTTGCTGTAACAAGACCGATAAACTCACTGCACACACCAAGGAGTTTATCCGGAAGCAAATGGAGAAAGAAATTGAGAAACTGAGGGCTTCAAGGAGTGCAGTCTCTACTGCTGATATAGCGAATGACTTCACCATTGGAATTGAGGGAGAAGTGTTCTCCTTCACGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTTACCGGAGAAACCATCCAGATTGAAGACTTCATTCGAGAATACATCAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

260

Amino Acids

29.08

Weight (kDa)

7.69

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	50 - 206	2.3e-14	ADP-ribosylation factor family
SRPRB	PF09439	55 - 235	2.9e-34	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	59 - 203	3.5e-07	Gtr1/RagA G protein conserved region
Roc	PF08477	59 - 180	2.3e-06	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	97 - 258	1.4e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	570
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	2 cut(s)	24, 383
AcuI	CTGAAG	2 cut(s)	50, 441
AfaI	GTAC	3 cut(s)	160, 177, 464
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	59, 612, 752
AjnI	CCWGG	2 cut(s)	147, 349
AluBI	AGCT	4 cut(s)	88, 376, 401, 455
AluI	AGCT	4 cut(s)	88, 376, 401, 455
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	570
ApeKI	GCWGC	3 cut(s)	398, 401, 452
ApoI	RAATTY	2 cut(s)	24, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
Asp700I	GAANNNNTTC	2 cut(s)	63, 647
AsuHPI	GGTGA	1 cut(s)	643
BaeGI	GKGCMC	2 cut(s)	254, 357
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	3 cut(s)	388, 410, 464
BccI	CCATC	3 cut(s)	131, 227, 749
BciT130I	CCWGG	2 cut(s)	149, 351
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	1 cut(s)	377
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	4 cut(s)	96, 399, 402, 453
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	4 cut(s)	97, 400, 403, 454
Bme1390I	CCNGG	2 cut(s)	149, 351
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	149, 351
BmsI	GCATC	4 cut(s)	55, 253, 412, 728
BpiI	GAAGAC	1 cut(s)	759
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu1102I	GCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	350, 426, 558
BsaWI	WCCGGW	3 cut(s)	194, 570, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	512
Bse3DI	GCAATG	1 cut(s)	688
BseAI	TCCGGA	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	149, 351
BseDI	CCNNGG	3 cut(s)	350, 426, 558
BseGI	GGATG	2 cut(s)	427, 741
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	3 cut(s)	24, 593, 705
BseNI	ACTGG	1 cut(s)	512
BseSI	GKGCMC	2 cut(s)	254, 357
BseXI	GCAGC	3 cut(s)	388, 410, 464
BsgI	GTGCAG	3 cut(s)	471, 534, 639
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	195, 571, 732
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	628
Bsp1286I	GDGCHC	3 cut(s)	216, 254, 357
Bsp13I	TCCGGA	1 cut(s)	570
Bsp143I	GATC	2 cut(s)	16, 236
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	96
BspCNI	CTCAG	3 cut(s)	25, 594, 706
BspEI	TCCGGA	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	3 cut(s)	350, 426, 558
BssMI	GATC	2 cut(s)	16, 236
BssT1I	CCWWGG	2 cut(s)	426, 558
Bst2UI	CCWGG	2 cut(s)	149, 351
Bst4CI	ACNGT	6 cut(s)	175, 211, 256, 299, 446, 709
Bst6I	CTCTTC	1 cut(s)	137
BstDEI	CTNAG	4 cut(s)	33, 309, 602, 714
BstF5I	GGATG	2 cut(s)	427, 741
BstKTI	GATC	2 cut(s)	19, 239
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	2 cut(s)	16, 236
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 361, 638
BstNI	CCWGG	2 cut(s)	149, 351
BstSCI	CCNGG	2 cut(s)	147, 349
BstSLI	GKGCMC	2 cut(s)	254, 357
BstV1I	GCAGC	3 cut(s)	388, 410, 464
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	427, 741
BtsI	GCAGTG	2 cut(s)	44, 546
BtsIMutI	CAGTG	6 cut(s)	44, 171, 252, 304, 546, 705
Csp6I	GTAC	3 cut(s)	159, 176, 463
CviAII	CATG	1 cut(s)	780
CviQI	GTAC	3 cut(s)	159, 176, 463
DdeI	CTNAG	4 cut(s)	33, 309, 602, 714
DpnI	GATC	2 cut(s)	18, 238
DpnII	GATC	2 cut(s)	16, 236
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	426, 558
Eco57I	CTGAAG	2 cut(s)	50, 441
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	147, 349
EcoT14I	CCWWGG	2 cut(s)	426, 558
ErhI	CCWWGG	2 cut(s)	426, 558
FaeI	CATG	1 cut(s)	783
FaiI	YATR	4 cut(s)	93, 469, 638, 781
FatI	CATG	1 cut(s)	779
Fnu4HI	GCNGC	4 cut(s)	96, 399, 402, 453
FokI	GGATG	2 cut(s)	434, 728
Fsp4HI	GCNGC	4 cut(s)	96, 399, 402, 453
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	4 cut(s)	96, 399, 402, 453
HapII	CCGG	3 cut(s)	195, 571, 732
Hin1II	CATG	1 cut(s)	783
HinfI	GANTC	3 cut(s)	82, 475, 508
HpaII	CCGG	3 cut(s)	195, 571, 732
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	6 cut(s)	21, 69, 155, 230, 460, 480
Hpy188III	TCNNGA	5 cut(s)	499, 571, 723, 745, 764
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	272, 691
HpyCH4III	ACNGT	6 cut(s)	175, 211, 256, 299, 446, 709
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	3 cut(s)	452, 551, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 361, 638
HpyF3I	CTNAG	4 cut(s)	33, 309, 602, 714
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	783
Kpn2I	TCCGGA	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	16, 236
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	3 cut(s)	388, 410, 464
LweI	GCATC	4 cut(s)	55, 253, 412, 728
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	256, 527, 703
MalI	GATC	2 cut(s)	18, 238
MboI	GATC	2 cut(s)	16, 236
MboII	GAAGA	9 cut(s)	26, 56, 82, 124, 284, 392, 514, 517, 764
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	3 cut(s)	216, 254, 357
MluCI	AATT	5 cut(s)	24, 54, 383, 591, 660
MmeI	TCCRAC	2 cut(s)	192, 720
MnlI	CCTC	5 cut(s)	446, 527, 597, 658, 709
MroI	TCCGGA	1 cut(s)	570
MroXI	GAANNNNTTC	2 cut(s)	63, 647
MspA1I	CMGCKG	2 cut(s)	88, 401
MspI	CCGG	3 cut(s)	195, 571, 732
MspR9I	CCNGG	2 cut(s)	149, 351
MvaI	CCWGG	2 cut(s)	149, 351
MwoI	GCNNNNNNNGC	3 cut(s)	43, 361, 638
NdeII	GATC	2 cut(s)	16, 236
NlaIII	CATG	1 cut(s)	783
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	137
PdmI	GAANNNNTTC	2 cut(s)	63, 647
PfeI	GAWTC	3 cut(s)	82, 475, 508
PkrI	GCNGC	4 cut(s)	97, 400, 403, 454
Psp6I	CCWGG	2 cut(s)	147, 349
PspGI	CCWGG	2 cut(s)	147, 349
PspN4I	GGNNCC	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	2 cut(s)	88, 401
RsaI	GTAC	3 cut(s)	160, 177, 464
RsaNI	GTAC	3 cut(s)	159, 176, 463
SapI	GCTCTTC	1 cut(s)	137
SatI	GCNGC	4 cut(s)	96, 399, 402, 453
Sau3AI	GATC	2 cut(s)	16, 236
ScrFI	CCNGG	2 cut(s)	149, 351
SduI	GDGCHC	3 cut(s)	216, 254, 357
SetI	ASST	6 cut(s)	90, 160, 378, 403, 457, 468
SfaNI	GCATC	4 cut(s)	55, 253, 412, 728
Sse9I	AATT	5 cut(s)	24, 54, 383, 591, 660
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	147, 349
StyI	CCWWGG	2 cut(s)	426, 558
TaaI	ACNGT	6 cut(s)	175, 211, 256, 299, 446, 709
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	367, 763
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	5 cut(s)	24, 54, 383, 591, 660
TatI	WGTACW	1 cut(s)	175
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	3 cut(s)	82, 475, 508
TscAI	CASTG	6 cut(s)	44, 178, 259, 304, 553, 712
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	3 cut(s)	398, 401, 452
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	3 cut(s)	291, 323, 748
TspRI	CASTG	6 cut(s)	44, 178, 259, 304, 553, 712
XapI	RAATTY	2 cut(s)	24, 383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XmnI	GAANNNNTTC	2 cut(s)	63, 647
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.