Rh5BG349100

Signal recognition particle receptor subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
53426941 .. 53436224
9284 bp
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UTR
Exon/CDS
Intron
Rh5BG349100.1

Sequence Viewer

Length: 354 bp
ATGGAAGGATTAGAACAATGGACGAAACAAGCAGAGCAATTGTCATCTCGAGTGTTACAACAATGGAAGGAACAGGCAGAGCAATTGTCATTTCAAGCACATGAATACCTTCAGCAGGTAGGTTGTTTAAACGCCAAAAAGCTAAATACCATACTGTTGACTGGGCTTAGTGGGAGTGGGAAGACTGTTCTTTTCTATCAAAACGGAAAGTTAAAGCCTGCACATCTTGTTGATGTTCCTGGGCATTCTCGCCTTAGACCCAAGTTAGACGAGTTTCTGCCTCAAGCAACTGGTATAGTATTTGTGGTGGATTTTGTGGGGTTTTTACCAAACTGTCGTGCTGCTTCAGAGTAA

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

7.81

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 106
AcuI CTGAAG 2 cut(s) 95, 330
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 240
BfuAI ACCTGC 1 cut(s) 106
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 166, 295
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 2 cut(s) 166, 295
BseXI GCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 106
BsrI ACTGG 2 cut(s) 166, 295
BssECI CCNNGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 3 cut(s) 156, 187, 335
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 167, 254
BstENI CCTNNNNNAGG 1 cut(s) 113
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 188
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 219
CviAII CATG 1 cut(s) 101
CviJI RGCY 3 cut(s) 142, 166, 217
CviKI_1 RGCY 3 cut(s) 142, 166, 217
DdeI CTNAG 2 cut(s) 167, 254
DraI TTTAAA 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 95, 330
Eco88I CYCGRG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 238
FaeI CATG 1 cut(s) 104
FaiI YATR 3 cut(s) 102, 152, 296
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
Hin1II CATG 1 cut(s) 104
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 61, 119
HpyCH4III ACNGT 3 cut(s) 156, 187, 335
HpyCH4V TGCA 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 167, 254
Hsp92II CATG 1 cut(s) 104
LpnPI CCDG 7 cut(s) 59, 101, 147, 225, 231, 252, 276
Lsp1109I GCAGC 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 54
MboII GAAGA 1 cut(s) 193
MfeI CAATTG 2 cut(s) 38, 83
MluCI AATT 2 cut(s) 38, 83
MnlI CCTC 1 cut(s) 291
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 2 cut(s) 128, 212
MspR9I CCNGG 1 cut(s) 240
MssI GTTTAAAC 1 cut(s) 129
MunI CAATTG 2 cut(s) 38, 83
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 240
NlaIII CATG 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 48
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 343
PmeI GTTTAAAC 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
SaqAI TTAA 2 cut(s) 128, 212
SatI GCNGC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 240
SetI ASST 4 cut(s) 111, 120, 124, 144
Sfr274I CTCGAG 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 2 cut(s) 48, 282
SmoI CTYRAG 2 cut(s) 48, 282
Sse9I AATT 2 cut(s) 38, 83
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 3 cut(s) 156, 187, 335
TaqI TCGA 1 cut(s) 49
TasI AATT 2 cut(s) 38, 83
Tru1I TTAA 2 cut(s) 128, 212
Tru9I TTAA 2 cut(s) 128, 212
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 219
XagI CCTNNNNNAGG 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.