Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

26897674 .. 26899915

Gene Structure 2242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAGGATTCAAAGAATGGAAGAAACAGGCAGAGCAATGGTCATCTCAAGCATTGCAACAATGGAAGAAACAGGCAGAGCCATTATGGTCTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACTCAGATCTATGCTGCTCTTGCTATCTTGTTGTTCAAACGGCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTTCGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAAGCCTGTGCATCTTGTTGATGTTCCTGGACATTCTCGTCTCAGACCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTATAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCTGCTTCAGAGTACCTGTACGATCTTTTGACCAAGGCAAGTGTGGTGAAGAAGAAAATTCCCATTCTTATTCTCTGCAACAAGACAGACAAAGTGACAGCACATAGCAAGGAGTTCATTCGCAAACAATTGGAGAAGGAAATTGACAAATTACGGGCATCAAGGAGTGCAATATCAACAGCTGATATTGCAAATGACTTTACTCTTGGAGTACTTGGTGAACCATTTTCATTCACTCAGTGTCAGAACAAAGTTACAGTTGCAGAAGGTGCGGGTATTATAGGCGAGGTCGCTGAGGTGGAACGGTTCATCAGGGACCATGTAAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

263

Amino Acids

29.37

Weight (kDa)

9.16

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	53 - 209	1.7e-17	ADP-ribosylation factor family
SRPRB	PF09439	58 - 238	2.8e-35	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	62 - 204	9.3e-07	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	3 cut(s)	122, 204, 731
AcsI	RAATTY	2 cut(s)	440, 516
AcuI	CTGAAG	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	699
AfaI	GTAC	5 cut(s)	107, 262, 473, 479, 672
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	13, 163
AjnI	CCWGG	1 cut(s)	358
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	176, 410, 641
AluI	AGCT	3 cut(s)	176, 410, 641
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	96, 377
ApeKI	GCWGC	3 cut(s)	140, 407, 461
ApoI	RAATTY	2 cut(s)	440, 516
AspS9I	GGNCC	1 cut(s)	775
AsuHPI	GGTGA	3 cut(s)	245, 517, 689
AvaII	GGWCC	1 cut(s)	775
Bbv12I	GWGCWC	1 cut(s)	303
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	127, 419, 448
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	96, 377
BfaI	CTAG	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	3 cut(s)	141, 408, 462
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	3 cut(s)	142, 409, 463
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	1 cut(s)	775
BmiI	GGNNCC	3 cut(s)	120, 279, 776
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	3 cut(s)	352, 421, 626
Bpu10I	CCTNAGC	1 cut(s)	753
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	3 cut(s)	33, 78, 387
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	256, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse3DI	GCAATG	2 cut(s)	44, 53
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	256, 492
BseGI	GGATG	2 cut(s)	247, 436
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	2 cut(s)	44, 53
BseMII	CTCAG	5 cut(s)	143, 182, 388, 710, 744
BseXI	GCAGC	3 cut(s)	127, 419, 448
BsiHKAI	GWGCWC	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	96, 377
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	788
Bso31I	GGTCTC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	132, 481
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	3 cut(s)	122, 204, 731
BspCNI	CTCAG	5 cut(s)	142, 183, 387, 709, 745
BspLI	GGNNCC	3 cut(s)	120, 279, 776
BspMI	ACCTGC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	44, 53
BssECI	CCNNGG	2 cut(s)	256, 492
BssMI	GATC	2 cut(s)	132, 481
BssT1I	CCWWGG	2 cut(s)	256, 492
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	220, 265, 718, 765
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	7 cut(s)	129, 191, 200, 374, 696, 753, 789
BstF5I	GGATG	2 cut(s)	247, 436
BstKTI	GATC	2 cut(s)	135, 484
BstMAI	GTCTC	2 cut(s)	96, 377
BstMBI	GATC	2 cut(s)	132, 481
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 146, 196, 647, 728
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	127, 419, 448
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	247, 436
BtsIMutI	CAGTG	1 cut(s)	704
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	775
Csp6I	GTAC	5 cut(s)	106, 261, 472, 478, 671
CviAII	CATG	2 cut(s)	101, 779
CviJI	RGCY	6 cut(s)	82, 176, 199, 337, 410, 641
CviKI_1	RGCY	6 cut(s)	82, 176, 199, 337, 410, 641
CviQI	GTAC	5 cut(s)	106, 261, 472, 478, 671
DdeI	CTNAG	7 cut(s)	129, 191, 200, 374, 696, 753, 789
DpnI	GATC	2 cut(s)	134, 483
DpnII	GATC	2 cut(s)	132, 481
DraIII	CACNNNGTG	1 cut(s)	699
DrdI	GACNNNNNNGTC	1 cut(s)	369
DseDI	GACNNNNNNGTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	256, 492
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	775
Eco57I	CTGAAG	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	256, 492
ErhI	CCWWGG	2 cut(s)	256, 492
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	2 cut(s)	104, 782
FaiI	YATR	8 cut(s)	88, 102, 138, 185, 416, 564, 740, 780
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	2 cut(s)	100, 778
FauI	CCCGC	2 cut(s)	197, 724
Fnu4HI	GCNGC	3 cut(s)	141, 408, 462
FokI	GGATG	2 cut(s)	254, 443
Fsp4HI	GCNGC	3 cut(s)	141, 408, 462
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	3 cut(s)	141, 408, 462
Hin1II	CATG	2 cut(s)	104, 782
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	3 cut(s)	245, 517, 689
Hpy166II	GTNNAC	1 cut(s)	680
Hpy188I	TCNGA	5 cut(s)	132, 310, 377, 469, 705
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	680
HpyAV	CCTTC	2 cut(s)	589, 719
HpyCH4III	ACNGT	4 cut(s)	220, 265, 718, 765
HpyCH4V	TGCA	6 cut(s)	58, 343, 537, 629, 650, 722
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 146, 196, 647, 728
HpyF3I	CTNAG	7 cut(s)	129, 191, 200, 374, 696, 753, 789
Hsp92II	CATG	2 cut(s)	104, 782
Kzo9I	GATC	2 cut(s)	132, 481
Lsp1109I	GCAGC	3 cut(s)	127, 419, 448
LweI	GCATC	3 cut(s)	352, 421, 626
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	265, 553, 712
MalI	GATC	2 cut(s)	134, 483
MboI	GATC	2 cut(s)	132, 481
MboII	GAAGA	4 cut(s)	34, 79, 520, 523
MfeI	CAATTG	1 cut(s)	587
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	6 cut(s)	304, 440, 516, 587, 600, 608
MnlI	CCTC	4 cut(s)	280, 411, 739, 748
MseI	TTAA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	410, 641
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	5 cut(s)	121, 146, 196, 647, 728
NdeII	GATC	2 cut(s)	132, 481
NlaIII	CATG	2 cut(s)	104, 782
NlaIV	GGNNCC	3 cut(s)	120, 279, 776
NmuCI	GTSAC	2 cut(s)	265, 553
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	142, 409, 463
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	3 cut(s)	120, 279, 776
PspPI	GGNCC	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	2 cut(s)	410, 641
RsaI	GTAC	5 cut(s)	107, 262, 473, 479, 672
RsaNI	GTAC	5 cut(s)	106, 261, 472, 478, 671
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	3 cut(s)	141, 408, 462
Sau3AI	GATC	2 cut(s)	132, 481
Sau96I	GGNCC	1 cut(s)	775
ScaI	AGTACT	1 cut(s)	672
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	9 cut(s)	120, 178, 262, 412, 477, 643, 730, 750, 759
SfaNI	GCATC	3 cut(s)	352, 421, 626
SinI	GGWCC	1 cut(s)	775
SmlI	CTYRAG	3 cut(s)	48, 93, 402
SmoI	CTYRAG	3 cut(s)	48, 93, 402
Sse9I	AATT	6 cut(s)	304, 440, 516, 587, 600, 608
SsiI	CCGC	3 cut(s)	122, 204, 731
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	2 cut(s)	256, 492
TaaI	ACNGT	4 cut(s)	220, 265, 718, 765
TasI	AATT	6 cut(s)	304, 440, 516, 587, 600, 608
TatI	WGTACW	2 cut(s)	105, 670
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	704
TseFI	GTSAC	2 cut(s)	265, 553
TseI	GCWGC	3 cut(s)	140, 407, 461
Tsp45I	GTSAC	2 cut(s)	265, 553
TspDTI	ATGAA	3 cut(s)	565, 678, 757
TspRI	CASTG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	775
XapI	RAATTY	2 cut(s)	440, 516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.