Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001320

Physical Location & Seq

Genomic Coordinates Forward (+)

14362268 .. 14370836

Gene Structure 8569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10641.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAGGATTCGATGAATGGAAGAAACAGGCAGATAAATGGTTATCTCAAGCATCGCAACAATGGCAGAAACATGCAGAGCCATTGTGCTCTCAAGCACAAGAGTACATTCAGCAGGTTCCACCAACTCAGATCTATGCTGCTCTTGCCGTCTTGCTATTAACATCAGTGTTGTTCATATTGGGTAGGTTTTTTAAACGCCAAAAAGCTCATACTATATTGCTGAGTGGGCTTAGTGGGAGTGGGAAGACTGTTCTTTTCTATCAACTTCGGGATGGCTCTGCTCACCTAGGTACTGTCACATCAATGGAACCAAATGAGGGATCTTTTGTGCTCCATTCTGAAAAATCAAAGACTGGAAAAGTTAAGCCTGTACATCTTGTTGATGTTCCTGGACATTCTCGCCTCAGGCCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTGTAATTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCTGCTTCAGAGTACCTGTATGATATTTTGACCAAGGCAAGTGTGGTGAAGAAGAAAATTCCGGTTCTTGTTCTCTGCAACAAGACAGACAAAGTAACAGCACATAGCAAGGACTTCATTCGAAAACAATTGGAGAAGGAAATTGATAAATTACGGGCATCCAGAAGCGCAATATCAACAGCTGATATTGCAAATGACTTTACTCTTGGGGTACTTGGCGAACCATTTTCATTCACTCAGTGTCAGAACAAGGTTACAGTTGCAGAAGCTGCGGGTATTACGAGTGATATAATTGAGGTGGAACAGTTCATCAGGGACCATGTGAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005047 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005785 GO:0005789 GO:0005791 GO:0012505 GO:0016020 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0042175 GO:0043021 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0098588 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SRPRB

Protein Analysis

275

Amino Acids

30.49

Weight (kDa)

8.83

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	60 - 220	1.1e-16	ADP-ribosylation factor family
SRPRB	PF09439	69 - 249	7e-34	Signal recognition particle receptor beta subunit
Gtr1_RagA	PF04670	73 - 215	6.4e-07	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18770 AT2G18770 AT5G05670 AT5G05670
fragaria_vesca	FvH4_3g28340 FvH4_3g28340 FvH4_4g10641
malus_domestica	MD06G1037800.v1.1 MD10G1002700.v1.1
prunus_persica	Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.4G272800_v2.0.a1 Prupe.5G031200_v2.0.a1 Prupe.5G031200_v2.0.a1
pyrus_communis	pycom06g03150 pycom15g12080
rosa_chinensis	RchiOBHm_Chr2g0115401 RchiOBHm_Chr4g0406261 RchiOBHm_Chr5g0051231 RchiOBHm_Chr7g0219271
rosa_laevigata	RLG00000008613 RLG00000008614 RLG00000008783 RLG00000018183
rosa_multiflora	Rmu_ssc0000456.1_g000007
rosa_roxburghii	Rroxscaffold_5G00351000 Rroxscaffold_5G00353260
rosa_rugosa	Rorug02G0196100 Rorug02G0196200 Rorug02G0196300 Rorug04G0067300 Rorug07G0184000
rosa_samantha	Rh2AG254600 Rh2BG264900 Rh2CG259200 Rh2DG262700 Rh4AG136800 Rh4BG134400 Rh4CG145000 Rh4DG131500 Rh5BG349100 Rh5DG362000 Rh7AG327000 Rh7BG316900 Rh7CG344300 Rh7DG322400
rosa_wichuraiana	Rw2G019890 Rw4G011090 Rw4G011230 Rw5G032040 Rw7G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	1 cut(s)	764
AclWI	GGATC	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	473, 549
AcuI	CTGAAG	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	732
AfaI	GTAC	5 cut(s)	107, 295, 375, 506, 705
AfiI	CCNNNNNNNGG	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	4 cut(s)	209, 443, 674, 761
AluI	AGCT	4 cut(s)	209, 443, 674, 761
Alw21I	GWGCWC	2 cut(s)	92, 336
AlwI	GGATC	1 cut(s)	331
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	4 cut(s)	140, 440, 494, 761
ApoI	RAATTY	2 cut(s)	473, 549
AspA2I	CCTAGG	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	2 cut(s)	411, 808
AsuHPI	GGTGA	2 cut(s)	278, 550
AsuII	TTCGAA	1 cut(s)	613
AvaII	GGWCC	1 cut(s)	808
AvrII	CCTAGG	1 cut(s)	289
AxyI	CCTNAGG	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	2 cut(s)	92, 336
BbvI	GCAGC	4 cut(s)	127, 452, 481, 748
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	393
BfaI	CTAG	2 cut(s)	290, 419
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	4 cut(s)	141, 441, 495, 762
BlnI	CCTAGG	1 cut(s)	289
BlsI	GCNGC	4 cut(s)	142, 442, 496, 763
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	411, 808
BmiI	GGNNCC	3 cut(s)	120, 312, 809
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	3 cut(s)	62, 454, 659
BpiI	GAAGAC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	613
BpuEI	CTTGAG	3 cut(s)	33, 78, 420
BsaJI	CCNNGG	2 cut(s)	289, 525
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	361
Bse21I	CCTNAGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	289, 525
BseGI	GGATG	3 cut(s)	280, 469, 650
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	4 cut(s)	143, 215, 421, 743
BseNI	ACTGG	1 cut(s)	361
BseXI	GCAGC	4 cut(s)	127, 452, 481, 748
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	92, 336
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	821
BsnI	GGCC	1 cut(s)	412
Bsp119I	TTCGAA	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	92, 336
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	132, 323
BspACI	CCGC	1 cut(s)	764
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	4 cut(s)	142, 216, 420, 742
BspLI	GGNNCC	3 cut(s)	120, 312, 809
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	289, 525
BssMI	GATC	2 cut(s)	132, 323
BssT1I	CCWWGG	2 cut(s)	289, 525
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	4 cut(s)	253, 298, 751, 798
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	373
BstBI	TTCGAA	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	6 cut(s)	129, 224, 233, 407, 729, 822
BstF5I	GGATG	3 cut(s)	280, 469, 650
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	2 cut(s)	135, 326
BstMBI	GATC	2 cut(s)	132, 323
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 146, 229, 680, 761
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	4 cut(s)	127, 452, 481, 748
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	132, 323
BstYI	RGATCY	2 cut(s)	132, 323
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	412
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	280, 469, 650
BtsIMutI	CAGTG	2 cut(s)	174, 737
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	492
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	411, 808
Csp6I	GTAC	5 cut(s)	106, 294, 374, 505, 704
CviAII	CATG	2 cut(s)	74, 812
CviJI	RGCY	9 cut(s)	82, 209, 232, 279, 370, 412, 443, 674, 761
CviKI_1	RGCY	9 cut(s)	82, 209, 232, 279, 370, 412, 443, 674, 761
CviQI	GTAC	5 cut(s)	106, 294, 374, 505, 704
DdeI	CTNAG	6 cut(s)	129, 224, 233, 407, 729, 822
DpnI	GATC	2 cut(s)	134, 325
DpnII	GATC	2 cut(s)	132, 323
DraI	TTTAAA	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	732
Eco130I	CCWWGG	2 cut(s)	289, 525
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	483
Eco81I	CCTNAGG	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	289, 525
ErhI	CCWWGG	2 cut(s)	289, 525
FaeI	CATG	2 cut(s)	77, 815
FaiI	YATR	9 cut(s)	75, 138, 179, 213, 218, 513, 597, 782, 813
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	2 cut(s)	73, 811
FauI	CCCGC	1 cut(s)	757
Fnu4HI	GCNGC	4 cut(s)	141, 441, 495, 762
FokI	GGATG	3 cut(s)	287, 476, 637
Fsp4HI	GCNGC	4 cut(s)	141, 441, 495, 762
FspBI	CTAG	2 cut(s)	290, 419
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	4 cut(s)	141, 441, 495, 762
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	554
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	2 cut(s)	77, 815
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	278, 550
Hpy188I	TCNGA	4 cut(s)	132, 343, 502, 738
Hpy188III	TCNNGA	2 cut(s)	272, 654
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	4 cut(s)	253, 298, 751, 798
HpyCH4V	TGCA	4 cut(s)	77, 570, 683, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 146, 229, 680, 761
HpyF3I	CTNAG	6 cut(s)	129, 224, 233, 407, 729, 822
Hsp92II	CATG	2 cut(s)	77, 815
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	2 cut(s)	132, 323
LmnI	GCTCC	1 cut(s)	339
Lsp1109I	GCAGC	4 cut(s)	127, 452, 481, 748
LweI	GCATC	3 cut(s)	62, 454, 659
MaeI	CTAG	2 cut(s)	290, 419
MaeIII	GTNAC	3 cut(s)	298, 586, 745
MalI	GATC	2 cut(s)	134, 325
MboI	GATC	2 cut(s)	132, 323
MboII	GAAGA	4 cut(s)	34, 259, 553, 556
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	2 cut(s)	132, 323
MhlI	GDGCHC	2 cut(s)	92, 336
MluCI	AATT	7 cut(s)	450, 473, 549, 620, 633, 641, 783
MnlI	CCTC	4 cut(s)	313, 416, 444, 781
MseI	TTAA	3 cut(s)	161, 195, 366
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	443, 674
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	5 cut(s)	64, 146, 229, 680, 761
NdeII	GATC	2 cut(s)	132, 323
NlaIII	CATG	2 cut(s)	77, 815
NlaIV	GGNNCC	3 cut(s)	120, 312, 809
NmuCI	GTSAC	1 cut(s)	298
NspI	RCATGY	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	142, 442, 496, 763
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	120, 312, 809
PspPI	GGNCC	2 cut(s)	411, 808
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	132, 323
PvuII	CAGCTG	2 cut(s)	443, 674
RsaI	GTAC	5 cut(s)	107, 295, 375, 506, 705
RsaNI	GTAC	5 cut(s)	106, 294, 374, 505, 704
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	161, 195, 366
SatI	GCNGC	4 cut(s)	141, 441, 495, 762
Sau3AI	GATC	2 cut(s)	132, 323
Sau96I	GGNCC	2 cut(s)	411, 808
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	92, 336
SfaNI	GCATC	3 cut(s)	62, 454, 659
SfuI	TTCGAA	1 cut(s)	613
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	3 cut(s)	48, 93, 435
SmoI	CTYRAG	3 cut(s)	48, 93, 435
Sse9I	AATT	7 cut(s)	450, 473, 549, 620, 633, 641, 783
SsiI	CCGC	1 cut(s)	764
SspMI	CTAG	2 cut(s)	290, 419
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	289, 525
TaaI	ACNGT	4 cut(s)	253, 298, 751, 798
TaqI	TCGA	2 cut(s)	12, 613
TasI	AATT	7 cut(s)	450, 473, 549, 620, 633, 641, 783
TatI	WGTACW	2 cut(s)	105, 373
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	3 cut(s)	161, 195, 366
Tru9I	TTAA	3 cut(s)	161, 195, 366
TscAI	CASTG	2 cut(s)	174, 737
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	4 cut(s)	140, 440, 494, 761
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	5 cut(s)	30, 166, 598, 711, 790
TspRI	CASTG	2 cut(s)	174, 737
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	2 cut(s)	473, 549
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmaJI	CCTAGG	1 cut(s)	289
XspI	CTAG	2 cut(s)	290, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.