Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

19622332 .. 19622865

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37332

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAGCATTTCCTGGATTTGCAGGACAACCCAACCCATTTCGCTGACCCGAAATGGGAATCCAACTCGTCTCCGACTCACCACCACCTGACTCAGTCCTCCTCCGCCACCAACGCTAACGCCAACGCCAACGCCAACGCCAACCTTGACCGTGTCCTCTTCCAAGACCTCATCGAGATCATCCCTCTCGTCCAGTCCCTCATCTTAAGCCCACCAAAATCCAGCTCTCAATTTCTCAAAATTCAAGCTTTGATCTCTAATTTTCAGTCTGGTAATTCAGGATCGGAAAGCCAGCAGCTCATGCATGCGCCGTGGTTCGGTCACCTACACCAAGACGCCTTCCAGAGACTCCTTATCCAAAAAAGTAAGATTTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

6.42

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	55, 317
AflII	CTTAAG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	3 cut(s)	225, 248, 298
AluI	AGCT	3 cut(s)	225, 248, 298
Alw26I	GTCTC	2 cut(s)	75, 340
AlwI	GGATC	1 cut(s)	289
ApeKI	GCWGC	2 cut(s)	4, 295
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	71, 314
BbvI	GCAGC	2 cut(s)	16, 307
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	75, 340
BfrI	CTTAAG	1 cut(s)	205
BisI	GCNGC	2 cut(s)	5, 296
BlsI	GCNGC	2 cut(s)	6, 297
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 317
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	55, 317
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	16, 307
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	55, 317
BsmAI	GTCTC	2 cut(s)	75, 340
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	177, 252, 281
BspACI	CCGC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	3 cut(s)	177, 252, 281
BssNI	GRCGYC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	293, 306
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	311
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	180, 255, 284
BstMAI	GTCTC	2 cut(s)	75, 340
BstMBI	GATC	3 cut(s)	177, 252, 281
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 301
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	16, 307
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	293, 306
CfoI	GCGC	1 cut(s)	310
CseI	GACGC	1 cut(s)	344
CviAII	CATG	2 cut(s)	301, 305
CviJI	RGCY	5 cut(s)	210, 225, 248, 291, 298
CviKI_1	RGCY	5 cut(s)	210, 225, 248, 291, 298
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	3 cut(s)	179, 254, 283
DpnII	GATC	3 cut(s)	177, 252, 281
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	94
Eco91I	GGTNACC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	2 cut(s)	304, 308
FaiI	YATR	2 cut(s)	302, 306
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	300, 304
Fnu4HI	GCNGC	2 cut(s)	5, 296
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	5, 296
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	2 cut(s)	5, 296
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	304, 308
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	4 cut(s)	59, 76, 91, 348
HphI	GGTGA	2 cut(s)	71, 314
Hpy188I	TCNGA	2 cut(s)	75, 286
Hpy188III	TCNNGA	3 cut(s)	175, 279, 343
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	3 cut(s)	4, 22, 304
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 301
HpyF3I	CTNAG	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	304, 308
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	177, 252, 281
LpnPI	CCDG	9 cut(s)	8, 26, 101, 206, 235, 255, 264, 305, 356
Lsp1109I	GCAGC	2 cut(s)	16, 307
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	179, 254, 283
MboI	GATC	3 cut(s)	177, 252, 281
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	4 cut(s)	230, 240, 259, 274
MlyI	GAGTC	3 cut(s)	70, 85, 342
MmeI	TCCRAC	2 cut(s)	87, 98
MnlI	CCTC	6 cut(s)	109, 112, 167, 179, 195, 209
Mph1103I	ATGCAT	1 cut(s)	306
MseI	TTAA	2 cut(s)	206, 379
MspCI	CTTAAG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	113, 301
NdeII	GATC	3 cut(s)	177, 252, 281
NlaIII	CATG	2 cut(s)	304, 308
NmuCI	GTSAC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	59
PflFI	GACNNNGTC	2 cut(s)	94, 152
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	6, 297
PleI	GAGTC	3 cut(s)	70, 85, 342
PpsI	GAGTC	3 cut(s)	70, 85, 342
Psp6I	CCWGG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	12
PsyI	GACNNNGTC	2 cut(s)	94, 152
SaqAI	TTAA	2 cut(s)	206, 379
SatI	GCNGC	2 cut(s)	5, 296
Sau3AI	GATC	3 cut(s)	177, 252, 281
SchI	GAGTC	3 cut(s)	70, 85, 342
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	7 cut(s)	90, 147, 171, 227, 250, 300, 327
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	4 cut(s)	230, 240, 259, 274
SsiI	CCGC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	4 cut(s)	230, 240, 259, 274
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	206, 379
Tru9I	TTAA	2 cut(s)	206, 379
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	2 cut(s)	4, 295
Tsp45I	GTSAC	1 cut(s)	320
Tth111I	GACNNNGTC	2 cut(s)	94, 152
Vha464I	CTTAAG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.