Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

4233217 .. 4235305

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG060500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCAGCACTTACTGGATTTGCAGGAAAACCGGACCCATTTCGCTGACCCGAAATGGGAATCCAACTCGTCTCCGACTCACCACCACCTGACTCAGTCCTCCAACGCCAACCTCGACCGCGTCCTCTTCCAAGACCTCGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCCAGCAGCTCATTCACGCGCCGCGGTTCGGTCACCTACACCAAGACGCCTTCCAGAGACTCCTTATCCAAAAAAGTGCCGAACAGGAATGGGGCTCAATCCATGCCGGCAAGAAAGAAGAGGGAGAGTGCTAGCAATAACCCGGATGCTGACAGCGTTTTAAGTTTTTCCTCAAAGGCTTCGGCGGCAGAAAAGGATGACGACGAAGAGTTGGATGCGTTAAGGGTTCAGTTGGAGGATCTGCAGAGGAAATTGTTGGAGAAGGATGAGCTTTTGAAGTCGTCGGAGATCTCAAAGAACGAAGTGAGTGCTGTTCAAGCAAAACTTGAGGAACTGAAGCGCCAAGCTGCGCAAAAGGATTCTGTAATCAAGGCTTCTCAGCTACAACTATCTGATGCAAAGATCAAGCTTGCAGACAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGCTATGACATCAAACAAGAGTGCAGATAAGCTCCAAGGAGAGCTAGACTCTTTGCGAGGAGACATTTCCACAATTATGATCCTATTCGAAGGCTTGGTGAAAACTGATTCTAATCCATCCGCTGAAGATTATGATATTTCACCTTGTACTGTGGATCATCTTCCATATATTGACGATTGGGATGAGTCGCAGATGCAGAGAATGGAAGCTGCTAGAAAAGCTTACGAAGCTGCTGTTGTTGCTGCAAAAGAAAGGCAAGATGAAGAATCTATTGCTGCTGCAGCCAATGCAAGGTTACATCTTCAATCGTTTGTTTTGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.52

Weight (kDa)

5.42

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	531
AccII	CGCG	3 cut(s)	120, 199, 204
AciI	CCGC	5 cut(s)	118, 202, 204, 365, 750
AclWI	GGATC	3 cut(s)	426, 703, 792
AcuI	CTGAAG	2 cut(s)	536, 774
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	3 cut(s)	55, 208, 921
AgsI	TTSAA	4 cut(s)	457, 497, 935, 949
Alw26I	GTCTC	3 cut(s)	75, 231, 684
AlwI	GGATC	3 cut(s)	426, 703, 792
AspLEI	GCGC	3 cut(s)	201, 522, 532
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	71, 205, 739, 762
AsuII	TTCGAA	1 cut(s)	717
AsuNHI	GCTAGC	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	277
BccI	CCATC	1 cut(s)	754
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	75, 231, 684
BfaI	CTAG	3 cut(s)	312, 674, 843
BfmI	CTRYAG	2 cut(s)	422, 909
BfoI	RGCGCY	1 cut(s)	523
BglII	AGATCT	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	4 cut(s)	316, 385, 565, 813
BmtI	GCTAGC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
Bpu14I	TTCGAA	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	202, 664
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 208, 921
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	18, 160
Bse8I	GATNNNNATC	1 cut(s)	741
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	202, 664
BseGI	GGATG	6 cut(s)	331, 382, 400, 451, 746, 817
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	55, 208, 921
BseMII	CTCAG	2 cut(s)	107, 572
BseNI	ACTGG	2 cut(s)	18, 160
BseRI	GAGGAG	1 cut(s)	702
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	3 cut(s)	120, 199, 204
Bsh1285I	CGRYCG	2 cut(s)	118, 175
BshVI	ATCGAT	1 cut(s)	171
BsiEI	CGRYCG	2 cut(s)	118, 175
BsiSI	CCGG	3 cut(s)	31, 287, 323
BslFI	GGGAC	2 cut(s)	134, 148
BslI	CCNNNNNNNGG	3 cut(s)	55, 208, 921
BsmAI	GTCTC	3 cut(s)	75, 231, 684
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	134, 148
Bsp119I	TTCGAA	1 cut(s)	717
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
BspACI	CCGC	5 cut(s)	118, 202, 204, 365, 750
BspCNI	CTCAG	2 cut(s)	106, 571
BspDI	ATCGAT	1 cut(s)	171
BspFNI	CGCG	3 cut(s)	120, 199, 204
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	2 cut(s)	426, 913
BspOI	GCTAGC	1 cut(s)	315
BspPI	GGATC	3 cut(s)	426, 703, 792
BspT104I	TTCGAA	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	18, 160
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	202, 664
BssMI	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	664
Bst4CI	ACNGT	2 cut(s)	624, 781
Bst6I	CTCTTC	3 cut(s)	131, 293, 381
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstBI	TTCGAA	1 cut(s)	717
BstC8I	GCNNGC	5 cut(s)	184, 288, 313, 591, 603
BstDEI	CTNAG	2 cut(s)	93, 558
BstDSI	CCRYGG	1 cut(s)	202
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	6 cut(s)	331, 382, 400, 451, 746, 817
BstFNI	CGCG	3 cut(s)	120, 199, 204
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	3 cut(s)	201, 522, 532
BstKTI	GATC	7 cut(s)	147, 175, 421, 471, 585, 711, 787
BstMAI	GTCTC	3 cut(s)	75, 231, 684
BstMBI	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
BstMCI	CGRYCG	2 cut(s)	118, 175
BstMWI	GCNNNNNNNGC	7 cut(s)	365, 497, 848, 857, 869, 911, 917
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	2 cut(s)	422, 909
BstUI	CGCG	3 cut(s)	120, 199, 204
BstX2I	RGATCY	2 cut(s)	418, 468
BstYI	RGATCY	2 cut(s)	418, 468
Bsu15I	ATCGAT	1 cut(s)	171
BsuTUI	ATCGAT	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	6 cut(s)	331, 382, 400, 451, 746, 817
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	5 cut(s)	184, 288, 313, 591, 603
CfoI	GCGC	3 cut(s)	201, 522, 532
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	33
Cfr42I	CCGCGG	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	171
CseI	GACGC	2 cut(s)	109, 235
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	1 cut(s)	283
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	2 cut(s)	93, 558
DpnI	GATC	7 cut(s)	146, 174, 420, 470, 584, 710, 786
DpnII	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
Eam1104I	CTCTTC	3 cut(s)	131, 293, 381
EarI	CTCTTC	3 cut(s)	131, 293, 381
Eco130I	CCWWGG	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	536, 774
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	664
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	664
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	286
FaiI	YATR	6 cut(s)	284, 635, 707, 762, 796, 798
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	2 cut(s)	134, 148
FatI	CATG	1 cut(s)	282
FokI	GGATG	6 cut(s)	338, 389, 407, 458, 733, 824
FriOI	GRGCYC	1 cut(s)	277
FspBI	CTAG	3 cut(s)	312, 674, 843
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	3 cut(s)	200, 521, 531
HaeII	RGCGCY	1 cut(s)	523
HapII	CCGG	3 cut(s)	31, 287, 323
HgaI	GACGC	2 cut(s)	109, 235
HhaI	GCGC	3 cut(s)	201, 522, 532
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	3 cut(s)	199, 520, 530
HinP1I	GCGC	3 cut(s)	199, 520, 530
HindIII	AAGCTT	2 cut(s)	587, 849
HinfI	GANTC	9 cut(s)	59, 76, 91, 239, 539, 677, 737, 815, 896
HpaII	CCGG	3 cut(s)	31, 287, 323
HphI	GGTGA	4 cut(s)	71, 205, 739, 762
Hpy188I	TCNGA	4 cut(s)	75, 177, 466, 574
Hpy188III	TCNNGA	2 cut(s)	142, 234
Hpy99I	CGWCG	3 cut(s)	143, 386, 466
HpyAV	CCTTC	3 cut(s)	240, 436, 713
HpyCH4III	ACNGT	2 cut(s)	624, 781
HpyF10VI	GCNNNNNNNGC	7 cut(s)	365, 497, 848, 857, 869, 911, 917
HpyF3I	CTNAG	2 cut(s)	93, 558
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	3 cut(s)	199, 520, 530
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
LmnI	GCTCC	1 cut(s)	666
LpnPI	CCDG	9 cut(s)	8, 44, 101, 173, 196, 247, 250, 300, 336
LweI	GCATC	4 cut(s)	316, 385, 565, 813
MaeI	CTAG	3 cut(s)	312, 674, 843
MaeIII	GTNAC	3 cut(s)	211, 618, 924
MalI	GATC	7 cut(s)	146, 174, 420, 470, 584, 710, 786
MboI	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
MboII	GAAGA	7 cut(s)	118, 310, 398, 767, 782, 905, 923
MflI	RGATCY	2 cut(s)	418, 468
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	2 cut(s)	431, 702
MlyI	GAGTC	5 cut(s)	70, 85, 233, 671, 824
MmeI	TCCRAC	7 cut(s)	87, 98, 126, 372, 393, 417, 444
MroNI	GCCGGC	1 cut(s)	286
MseI	TTAA	2 cut(s)	341, 401
MslI	CAYNNNNRTG	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	204, 752
MspI	CCGG	3 cut(s)	31, 287, 323
MspR9I	CCNGG	1 cut(s)	323
MvnI	CGCG	3 cut(s)	120, 199, 204
MwoI	GCNNNNNNNGC	7 cut(s)	365, 497, 848, 857, 869, 911, 917
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
NgoMIV	GCCGGC	1 cut(s)	286
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	531
NspV	TTCGAA	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 144, 153
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	4 cut(s)	59, 539, 737, 896
PflFI	GACNNNGTC	3 cut(s)	94, 119, 137
Ple19I	CGATCG	1 cut(s)	175
PleI	GAGTC	5 cut(s)	70, 85, 233, 671, 823
PpsI	GAGTC	5 cut(s)	70, 85, 233, 671, 823
PspEI	GGTNACC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	2 cut(s)	426, 913
PsuI	RGATCY	2 cut(s)	418, 468
PsyI	GACNNNGTC	3 cut(s)	94, 119, 137
PvuI	CGATCG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	704
SacII	CCGCGG	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	341, 401
Sau3AI	GATC	7 cut(s)	144, 172, 418, 468, 582, 708, 784
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	5 cut(s)	70, 85, 233, 671, 824
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	4 cut(s)	316, 385, 565, 813
SfcI	CTRYAG	2 cut(s)	422, 909
Sfr303I	CCGCGG	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	717
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	431, 702
SsiI	CCGC	5 cut(s)	118, 202, 204, 365, 750
SspMI	CTAG	3 cut(s)	312, 674, 843
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	2 cut(s)	624, 781
TaqI	TCGA	4 cut(s)	114, 141, 171, 717
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	2 cut(s)	431, 702
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	2 cut(s)	204, 368
TfiI	GAWTC	4 cut(s)	59, 539, 737, 896
Tru1I	TTAA	2 cut(s)	341, 401
Tru9I	TTAA	2 cut(s)	341, 401
TscAI	CASTG	1 cut(s)	629
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	906
TspRI	CASTG	1 cut(s)	629
Tth111I	GACNNNGTC	3 cut(s)	94, 119, 137
VpaK11BI	GGWCC	1 cut(s)	33
XspI	CTAG	3 cut(s)	312, 674, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.