Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

19733904 .. 19736360

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCAACTCGTCCCCGACTCACCGCCCTACTCAGTCCTCACTGGCTCACTCCTCCACCGCCACCAACAGCAATCTCGATCGCTTCCTCTTCAAAGACCTCGATCGTGCCTCTTGTCCAGTCCCTCATCGATCGGAAAGCTAGCAATTCGTTTACGCGGCGGGGTTCGGTGGCGTACACCAAGACACCTTCAAGAGAATCCTTATCCAAAAAAGTTGAACAAAAAGGGAGGAATGCGGCTCAATCCATTCCCGTGAGAAAGAAGAGGGATGGTGACAAGGACTCAAGCAAAAATGCTGGCAGCCTTGATGCTGACAGCTTTTCAAGTTTTTCCTCGAGGGCTTCGGCAGTGGAAAAAGAAGAGTTGGATACATTAAGGGTACAGGTGGAAGATTTGCAAAAGAAAGTAGCAGAGAAGGAGGAACTTTTAAAGTCATCGGAGATCTCAAAGGACCAAATGAATGCAGTTCAAGCAAAACTGAATGAATATAAGCAACAAGTTTCGGAAAAAGATGCAGTAATAAAGGCTGTTAAGCAACAACTCTCTGATGCAAAGATTAAGCTTGCAGACAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGTGATGACATCCAACAGGAAAGTGGAGAAGCTCCAAGGAGAGCAAGACTCTTTGAAAGGACAGATGTCATCATTTATGCTCCTATTTGAAAGCTTGATGAAAGCTGATCCCGTTGTTTACGGTGAAGATTATGATATTTCAACGAATACTGTGGATCATCTTCCTCACATTGATGATTTGGATGAGGCACATATGAAGAAAATGGAAGAAGCTAGAAGAGCATACGTCGCTGCTGTTGCCGCTGCAAAAGAAAAGCAAGACGAAGAATCTATTGCCGCTGCAGGCAGTGCAAGGTTACATCTTCAGTCATTTGTTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

34.1

Weight (kDa)

8.75

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	334
AccII	CGCG	1 cut(s)	157
AciI	CCGC	7 cut(s)	24, 59, 157, 160, 236, 843, 879
AclWI	GGATC	2 cut(s)	704, 765
AcuI	CTGAAG	1 cut(s)	890
AfaI	GTAC	2 cut(s)	176, 381
AgsI	TTSAA	8 cut(s)	93, 192, 218, 324, 470, 658, 692, 744
AluBI	AGCT	8 cut(s)	140, 318, 562, 578, 634, 696, 707, 815
AluI	AGCT	8 cut(s)	140, 318, 562, 578, 634, 696, 707, 815
AlwI	GGATC	2 cut(s)	704, 765
Ama87I	CYCGRG	1 cut(s)	334
ApeKI	GCWGC	5 cut(s)	300, 578, 833, 845, 881
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	13, 284, 737
AsuNHI	GCTAGC	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	451
BbvI	GCAGC	5 cut(s)	312, 565, 820, 832, 868
BccI	CCATC	1 cut(s)	263
BciVI	GTATCC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	141, 816
BfmI	CTRYAG	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	9 cut(s)	158, 237, 301, 579, 834, 843, 846, 879, 882
BlsI	GCNGC	9 cut(s)	159, 238, 302, 580, 835, 844, 847, 880, 883
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	451
BmsI	GCATC	3 cut(s)	298, 502, 538
BmtI	GCTAGC	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	667
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
BpuEI	CTTGAG	1 cut(s)	268
Bsa29I	ATCGAT	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	637
Bse1I	ACTGG	2 cut(s)	47, 118
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	3 cut(s)	274, 611, 790
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	2 cut(s)	47, 118
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	5 cut(s)	312, 565, 820, 832, 868
Bsh1236I	CGCG	1 cut(s)	157
Bsh1285I	CGRYCG	3 cut(s)	81, 105, 133
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	3 cut(s)	81, 105, 133
BsiHKCI	CYCGRG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	106
BsmFI	GGGAC	1 cut(s)	106
BsmI	GAATGC	2 cut(s)	238, 466
BsoBI	CYCGRG	1 cut(s)	334
Bsp143I	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
BspACI	CCGC	7 cut(s)	24, 59, 157, 160, 236, 843, 879
BspCNI	CTCAG	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	886
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	704, 765
BspQI	GCTCTTC	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	47, 118
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
BssT1I	CCWWGG	1 cut(s)	637
Bst4CI	ACNGT	3 cut(s)	597, 725, 754
Bst6I	CTCTTC	4 cut(s)	94, 257, 354, 814
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstC8I	GCNNGC	5 cut(s)	142, 298, 564, 576, 886
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	274, 611, 790
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	6 cut(s)	81, 105, 133, 444, 712, 760
BstMBI	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
BstMCI	CGRYCG	3 cut(s)	81, 105, 133
BstMWI	GCNNNNNNNGC	6 cut(s)	470, 821, 830, 839, 842, 890
BstPAI	GACNNNNGTC	1 cut(s)	667
BstSFI	CTRYAG	1 cut(s)	882
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	5 cut(s)	312, 565, 820, 832, 868
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	274, 611, 790
BtsI	GCAGTG	2 cut(s)	354, 895
BtsIMutI	CAGTG	4 cut(s)	40, 354, 602, 895
Cac8I	GCNNGC	5 cut(s)	142, 298, 564, 576, 886
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	175, 380
CviAII	CATG	1 cut(s)	924
CviQI	GTAC	2 cut(s)	175, 380
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	6 cut(s)	80, 104, 132, 443, 711, 759
DpnII	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	4 cut(s)	94, 257, 354, 814
EarI	CTCTTC	4 cut(s)	94, 257, 354, 814
Eco130I	CCWWGG	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	890
Eco88I	CYCGRG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	1 cut(s)	927
FaiI	YATR	7 cut(s)	489, 680, 735, 795, 797, 826, 925
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	923
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	795
Fnu4HI	GCNGC	9 cut(s)	158, 237, 301, 579, 834, 843, 846, 879, 882
FokI	GGATG	3 cut(s)	281, 598, 797
Fsp4HI	GCNGC	9 cut(s)	158, 237, 301, 579, 834, 843, 846, 879, 882
FspBI	CTAG	2 cut(s)	141, 816
GluI	GCNGC	9 cut(s)	158, 237, 301, 579, 834, 843, 846, 879, 882
Hin1II	CATG	1 cut(s)	927
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	2 cut(s)	560, 694
HinfI	GANTC	5 cut(s)	18, 197, 281, 650, 869
HphI	GGTGA	3 cut(s)	13, 284, 737
Hpy166II	GTNNAC	4 cut(s)	6, 153, 177, 721
Hpy188I	TCNGA	4 cut(s)	135, 439, 505, 547
Hpy188III	TCNNGA	2 cut(s)	76, 192
Hpy8I	GTNNAC	4 cut(s)	6, 153, 177, 721
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	2 cut(s)	198, 409
HpyCH4III	ACNGT	3 cut(s)	597, 725, 754
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	8 cut(s)	397, 464, 515, 551, 566, 848, 884, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	470, 821, 830, 839, 842, 890
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	1 cut(s)	927
Kzo9I	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
LguI	GCTCTTC	1 cut(s)	814
LmnI	GCTCC	2 cut(s)	639, 687
LpnPI	CCDG	6 cut(s)	28, 131, 282, 368, 604, 870
Lsp1109I	GCAGC	5 cut(s)	312, 565, 820, 832, 868
LweI	GCATC	3 cut(s)	298, 502, 538
MaeI	CTAG	2 cut(s)	141, 816
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	3 cut(s)	272, 591, 897
MalI	GATC	6 cut(s)	80, 104, 132, 443, 711, 759
MboI	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
MflI	RGATCY	1 cut(s)	441
MluCI	AATT	1 cut(s)	145
MlyI	GAGTC	3 cut(s)	12, 275, 644
MmeI	TCCRAC	2 cut(s)	345, 639
MseI	TTAA	4 cut(s)	374, 428, 531, 558
MslI	CAYNNNNRTG	2 cut(s)	251, 774
MspA1I	CMGCKG	2 cut(s)	845, 881
Mva1269I	GAATGC	2 cut(s)	238, 466
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	6 cut(s)	470, 821, 830, 839, 842, 890
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	1 cut(s)	927
NmuCI	GTSAC	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	814
PctI	GAATGC	2 cut(s)	238, 466
PfeI	GAWTC	2 cut(s)	197, 869
PkrI	GCNGC	9 cut(s)	159, 238, 302, 580, 835, 844, 847, 880, 883
Ple19I	CGATCG	3 cut(s)	81, 105, 133
PleI	GAGTC	3 cut(s)	12, 275, 644
PpsI	GAGTC	3 cut(s)	12, 275, 644
PshAI	GACNNNNGTC	1 cut(s)	667
PspPI	GGNCC	1 cut(s)	451
PspXI	VCTCGAGB	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	441
PvuI	CGATCG	3 cut(s)	81, 105, 133
RsaI	GTAC	2 cut(s)	176, 381
RsaNI	GTAC	2 cut(s)	175, 380
RseI	CAYNNNNRTG	2 cut(s)	251, 774
SapI	GCTCTTC	1 cut(s)	814
SaqAI	TTAA	4 cut(s)	374, 428, 531, 558
SatI	GCNGC	9 cut(s)	158, 237, 301, 579, 834, 843, 846, 879, 882
Sau3AI	GATC	6 cut(s)	78, 102, 130, 441, 709, 757
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	3 cut(s)	12, 275, 644
SfaNI	GCATC	3 cut(s)	298, 502, 538
SfcI	CTRYAG	1 cut(s)	882
Sfr274I	CTCGAG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	2 cut(s)	251, 774
SmlI	CTYRAG	2 cut(s)	283, 334
SmoI	CTYRAG	2 cut(s)	283, 334
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	7 cut(s)	24, 59, 157, 160, 236, 843, 879
SspMI	CTAG	2 cut(s)	141, 816
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	3 cut(s)	597, 725, 754
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	4 cut(s)	77, 101, 129, 335
TasI	AATT	1 cut(s)	145
TauI	GCSGC	4 cut(s)	160, 239, 845, 881
TfiI	GAWTC	2 cut(s)	197, 869
Tru1I	TTAA	4 cut(s)	374, 428, 531, 558
Tru9I	TTAA	4 cut(s)	374, 428, 531, 558
TscAI	CASTG	4 cut(s)	47, 354, 602, 895
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	5 cut(s)	300, 578, 833, 845, 881
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	473, 498, 716, 812
TspRI	CASTG	4 cut(s)	47, 354, 602, 895
VpaK11BI	GGWCC	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XhoI	CTCGAG	1 cut(s)	334
XspI	CTAG	2 cut(s)	141, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.