Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

34048455 .. 34051435

Gene Structure 2981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1205700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTACGACCCGCAGCATTTCCTGGAATCGCAAGAGAATTCCAGTAATTTCGGGGACCCAAAATCCTGGCTTTCCGGGGATGCCAACTCGTCCCCGACCCACCGCTCGACTCAGTCCTCACTCGCTCACTCCTCCACCGCCACCAACAGCAATCTCGATCGCGTCCTCTTCAAAGACCTCGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCTAGCAGTTCTTTTACGCGGCGGGGTTCGGTGGCCTACACCAAGACACCTTCAAGAGAATCCTTACCCAAAAAAGTTGAACAAAAAGGGAGGAATGTGGCTCAATCCATTCCCGCCAGACAGAAGAGGGATCATGGAGACAAGGTCTCAAGCAAAAATGCTGGCAGCCTTGATGCTGACAGCTTTTCAAGTTTTTCCTCAAGGGCTTCGGCAGCGGAAAAAGAAGAGTTGGATACATTAAGGGTACTGGTTGATGATTTGCAAAAGAAAGTATCAGAGAAGGAGGAACTTTTAAAGTCGTCAGAGGTCTCAAAGGACCAATTGAACACTGTTCAAGCAAAACTGAATGAATATAAGCACCAAGTTGCAGAAAAAGACACGGTAATAAAGGCTGCTAAGCAACAACTCTCTGATGCAAAGATTAAACTTGCAGACAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGTGATGTCATCCAACAGGAAAGTGGAGAAGCTCGAAGGAGAGCAAGACTCCTTGCAAGGACAGATTTCGTCATTTATGCTCCTAATTGAAAGCTTGATGAAAGCCGATCCCATTATATACGGTGAAGATTATGATATTTCAACGTGTACTGTGGATCATCTTCCTCACATTGATAATTTGGATGAGGCACAGATGAGGAAAATGGAAGAAGCTAGAAGAGCATACATCACTGCTGTTGCTGCCACAAAAGAAAAGCAAGACGAAGAATCTATTGCCGCTGCAGCCAGTGCAAGGTTACATCTTCAGTCATTTATTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

37.5

Weight (kDa)

5.98

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	2 cut(s)	162, 241
AciI	CCGC	8 cut(s)	11, 103, 138, 241, 244, 336, 437, 966
AclWI	GGATC	3 cut(s)	360, 791, 852
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	977
AfaI	GTAC	3 cut(s)	5, 468, 838
AfiI	CCNNNNNNNGG	1 cut(s)	981
AflIII	ACRYGT	1 cut(s)	833
AgsI	TTSAA	8 cut(s)	172, 276, 302, 411, 547, 557, 779, 831
AjnI	CCWGG	2 cut(s)	21, 65
AluBI	AGCT	6 cut(s)	224, 405, 665, 721, 783, 902
AluI	AGCT	6 cut(s)	224, 405, 665, 721, 783, 902
Alw26I	GTCTC	3 cut(s)	354, 373, 535
AlwI	GGATC	3 cut(s)	360, 791, 852
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	8 cut(s)	13, 387, 434, 614, 665, 929, 968, 971
ApoI	RAATTY	1 cut(s)	37
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AspS9I	GGNCC	2 cut(s)	55, 538
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	824
AsuNHI	GCTAGC	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	55, 538
BbvI	GCAGC	8 cut(s)	25, 399, 446, 601, 652, 916, 955, 983
BciT130I	CCWGG	2 cut(s)	23, 67
BciVI	GTATCC	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	3 cut(s)	354, 373, 535
BfaI	CTAG	2 cut(s)	225, 903
BfmI	CTRYAG	1 cut(s)	969
BfuI	GTATCC	1 cut(s)	448
BlpI	GCTNAGC	1 cut(s)	618
Bme1390I	CCNGG	3 cut(s)	23, 67, 76
Bme18I	GGWCC	2 cut(s)	55, 538
BmgT120I	GGNCC	2 cut(s)	55, 538
BmiI	GGNNCC	2 cut(s)	56, 57
BmrFI	CCNGG	3 cut(s)	23, 67, 76
BmsI	GCATC	3 cut(s)	70, 385, 625
BmtI	GCTAGC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	2 cut(s)	355, 406
BpuMI	CCSGG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	213
BsaI	GGTCTC	2 cut(s)	373, 535
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	981
Bse1I	ACTGG	4 cut(s)	42, 202, 474, 975
BseBI	CCWGG	2 cut(s)	23, 67
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	3 cut(s)	85, 698, 877
BseLI	CCNNNNNNNGG	1 cut(s)	981
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	4 cut(s)	42, 202, 474, 975
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	8 cut(s)	25, 399, 446, 601, 652, 916, 955, 983
Bsh1236I	CGCG	2 cut(s)	162, 241
Bsh1285I	CGRYCG	2 cut(s)	160, 217
BshFI	GGCC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	213
BsiEI	CGRYCG	2 cut(s)	160, 217
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	4 cut(s)	68, 76, 176, 190
BslI	CCNNNNNNNGG	1 cut(s)	981
BsmAI	GTCTC	3 cut(s)	354, 373, 535
BsmFI	GGGAC	4 cut(s)	68, 76, 176, 190
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	2 cut(s)	373, 535
Bsp143I	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
Bsp1720I	GCTNAGC	1 cut(s)	618
BspACI	CCGC	8 cut(s)	11, 103, 138, 241, 244, 336, 437, 966
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	162, 241
BspLI	GGNNCC	2 cut(s)	56, 57
BspMAI	CTGCAG	1 cut(s)	973
BspOI	GCTAGC	1 cut(s)	228
BspPI	GGATC	3 cut(s)	360, 791, 852
BspQI	GCTCTTC	1 cut(s)	901
BspTNI	GGTCTC	2 cut(s)	373, 535
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	4 cut(s)	42, 202, 474, 975
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
Bst2UI	CCWGG	2 cut(s)	23, 67
Bst4CI	ACNGT	5 cut(s)	553, 604, 684, 812, 841
Bst6I	CTCTTC	4 cut(s)	173, 341, 441, 901
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstC8I	GCNNGC	3 cut(s)	226, 385, 663
BstDEI	CTNAG	2 cut(s)	111, 618
BstF5I	GGATG	3 cut(s)	85, 698, 877
BstFNI	CGCG	2 cut(s)	162, 241
BstKTI	GATC	6 cut(s)	160, 189, 217, 355, 799, 847
BstMAI	GTCTC	3 cut(s)	354, 373, 535
BstMBI	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
BstMCI	CGRYCG	2 cut(s)	160, 217
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 908, 929, 971, 977
BstNI	CCWGG	2 cut(s)	23, 67
BstSCI	CCNGG	3 cut(s)	21, 65, 74
BstSFI	CTRYAG	1 cut(s)	969
BstUI	CGCG	2 cut(s)	162, 241
BstV1I	GCAGC	8 cut(s)	25, 399, 446, 601, 652, 916, 955, 983
BstXI	CCANNNNNNTGG	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	85, 698, 877
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	4 cut(s)	549, 689, 918, 982
Cac8I	GCNNGC	3 cut(s)	226, 385, 663
Cfr13I	GGNCC	2 cut(s)	55, 538
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	4, 467, 837
CviAII	CATG	2 cut(s)	356, 1011
CviQI	GTAC	3 cut(s)	4, 467, 837
DdeI	CTNAG	2 cut(s)	111, 618
DpnI	GATC	6 cut(s)	159, 188, 216, 354, 798, 846
DpnII	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
DraI	TTTAAA	1 cut(s)	516
Eam1104I	CTCTTC	4 cut(s)	173, 341, 441, 901
EarI	CTCTTC	4 cut(s)	173, 341, 441, 901
Eco31I	GGTCTC	2 cut(s)	373, 535
Eco47I	GGWCC	2 cut(s)	55, 538
Eco57I	CTGAAG	1 cut(s)	977
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	21, 65
FaeI	CATG	2 cut(s)	359, 1014
FaiI	YATR	8 cut(s)	357, 576, 767, 806, 808, 822, 913, 1012
FaqI	GGGAC	4 cut(s)	68, 76, 176, 190
FatI	CATG	2 cut(s)	355, 1010
FauI	CCCGC	3 cut(s)	18, 237, 343
FokI	GGATG	3 cut(s)	92, 685, 884
FspBI	CTAG	2 cut(s)	225, 903
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	359, 1014
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	5 cut(s)	26, 109, 281, 737, 956
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	1 cut(s)	837
Hpy188I	TCNGA	4 cut(s)	219, 499, 526, 634
Hpy188III	TCNNGA	3 cut(s)	155, 184, 276
Hpy8I	GTNNAC	1 cut(s)	837
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	282, 496, 719
HpyCH4III	ACNGT	5 cut(s)	553, 604, 684, 812, 841
HpyCH4IV	ACGT	1 cut(s)	833
HpyCH4V	TGCA	7 cut(s)	484, 590, 638, 653, 745, 971, 980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 908, 929, 971, 977
HpyF3I	CTNAG	2 cut(s)	111, 618
HpySE526I	ACGT	1 cut(s)	833
Hsp92II	CATG	2 cut(s)	359, 1014
KflI	GGGWCCC	1 cut(s)	55
Kzo9I	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
LguI	GCTCTTC	1 cut(s)	901
LmnI	GCTCC	1 cut(s)	774
Lsp1109I	GCAGC	8 cut(s)	25, 399, 446, 601, 652, 916, 955, 983
LweI	GCATC	3 cut(s)	70, 385, 625
MaeI	CTAG	2 cut(s)	225, 903
MaeII	ACGT	1 cut(s)	833
MaeIII	GTNAC	2 cut(s)	678, 984
MalI	GATC	6 cut(s)	159, 188, 216, 354, 798, 846
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
MboII	GAAGA	9 cut(s)	160, 358, 458, 827, 842, 908, 918, 965, 983
MfeI	CAATTG	1 cut(s)	542
MluCI	AATT	5 cut(s)	37, 46, 542, 774, 865
MlyI	GAGTC	2 cut(s)	103, 731
MmeI	TCCRAC	2 cut(s)	432, 726
MseI	TTAA	3 cut(s)	461, 515, 645
MspA1I	CMGCKG	2 cut(s)	437, 968
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	3 cut(s)	23, 67, 76
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	2 cut(s)	23, 67
MvnI	CGCG	2 cut(s)	162, 241
MwoI	GCNNNNNNNGC	5 cut(s)	434, 908, 929, 971, 977
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
NheI	GCTAGC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	359, 1014
NlaIV	GGNNCC	2 cut(s)	56, 57
PciSI	GCTCTTC	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PfeI	GAWTC	3 cut(s)	26, 281, 956
PflFI	GACNNNGTC	3 cut(s)	112, 179, 365
PfoI	TCCNGGA	1 cut(s)	21
Ple19I	CGATCG	2 cut(s)	160, 217
PleI	GAGTC	2 cut(s)	103, 731
PpsI	GAGTC	2 cut(s)	103, 731
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	21, 65
PspGI	CCWGG	2 cut(s)	21, 65
PspN4I	GGNNCC	2 cut(s)	56, 57
PspPI	GGNCC	2 cut(s)	55, 538
PspPPI	RGGWCCY	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	973
PsyI	GACNNNGTC	3 cut(s)	112, 179, 365
PvuI	CGATCG	2 cut(s)	160, 217
RsaI	GTAC	3 cut(s)	5, 468, 838
RsaNI	GTAC	3 cut(s)	4, 467, 837
SapI	GCTCTTC	1 cut(s)	901
SaqAI	TTAA	3 cut(s)	461, 515, 645
Sau3AI	GATC	6 cut(s)	157, 186, 214, 352, 796, 844
Sau96I	GGNCC	2 cut(s)	55, 538
SchI	GAGTC	2 cut(s)	103, 731
ScrFI	CCNGG	3 cut(s)	23, 67, 76
SfaNI	GCATC	3 cut(s)	70, 385, 625
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	2 cut(s)	55, 538
SmlI	CTYRAG	2 cut(s)	370, 421
SmoI	CTYRAG	2 cut(s)	370, 421
Sse9I	AATT	5 cut(s)	37, 46, 542, 774, 865
SsiI	CCGC	8 cut(s)	11, 103, 138, 241, 244, 336, 437, 966
SspMI	CTAG	2 cut(s)	225, 903
StyD4I	CCNGG	3 cut(s)	21, 65, 74
TaaI	ACNGT	5 cut(s)	553, 604, 684, 812, 841
TaiI	ACGT	1 cut(s)	836
TaqI	TCGA	5 cut(s)	107, 156, 183, 213, 723
TasI	AATT	5 cut(s)	37, 46, 542, 774, 865
TatI	WGTACW	1 cut(s)	836
TauI	GCSGC	2 cut(s)	244, 968
TfiI	GAWTC	3 cut(s)	26, 281, 956
Tru1I	TTAA	3 cut(s)	461, 515, 645
Tru9I	TTAA	3 cut(s)	461, 515, 645
TscAI	CASTG	4 cut(s)	556, 689, 925, 982
TseI	GCWGC	8 cut(s)	13, 387, 434, 614, 665, 929, 968, 971
TspDTI	ATGAA	2 cut(s)	585, 803
TspRI	CASTG	4 cut(s)	556, 689, 925, 982
Tth111I	GACNNNGTC	3 cut(s)	112, 179, 365
VpaK11BI	GGWCC	2 cut(s)	55, 538
XapI	RAATTY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XspI	CTAG	2 cut(s)	225, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.