Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

22146481 .. 22147638

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAACGCTGTTCAAGCAAAACTGAATGAATATAAGCACCAAGTTGCAGAAAAAGACGCGGTAATAAAGGCGGCTAAGCTACAACTCTCTGATGCAAAGATTAAGCTTGCAGACAAGCAAGCTGCTTTGGAAAAGTTTCAGTGGGAAGTGATGACATCCAACAAGAAAGTGGAGAAGCTCGAAGGAGAGCAAGACTCCTTACAAGGACATATTTCGTCATTTATGCTCCTATTTGAAAGCTTGATGAAAGCTGATCCCATTGTATACGGTGAAGATTATGATATTTCAATGCGTACTATGGATCATCTTCCTCACATTGATGATTTGGATGAGGCACAGATGAGGAAAATGGAAGAAGCTAGAAGAGCATATATCGCTGCTGTTGCTGCCGCAAAAGAAAAGCAAGACGAAGAATCTATTGCCGCTGCAGCCAGTGCCAGGTTACATCTTCAGTCATTAGTTCTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.56

Weight (kDa)

5.4

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	59
AciI	CCGC	4 cut(s)	59, 71, 390, 423
AclWI	GGATC	2 cut(s)	248, 309
AcuI	CTGAAG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	14, 236, 288
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	7 cut(s)	79, 106, 122, 178, 240, 251, 359
AluI	AGCT	7 cut(s)	79, 106, 122, 178, 240, 251, 359
AlwI	GGATC	2 cut(s)	248, 309
ApeKI	GCWGC	5 cut(s)	122, 377, 386, 425, 428
Asp700I	GAANNNNTTC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	281
BbvI	GCAGC	5 cut(s)	109, 364, 373, 412, 440
BciT130I	CCWGG	1 cut(s)	439
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	8 cut(s)	72, 123, 378, 387, 390, 423, 426, 429
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	8 cut(s)	73, 124, 379, 388, 391, 424, 427, 430
Bme1390I	CCNGG	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu1102I	GCTNAGC	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	439
BseGI	GGATG	2 cut(s)	155, 334
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	5 cut(s)	109, 364, 373, 412, 440
Bsh1236I	CGCG	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	253, 301
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	59, 71, 390, 423
BspFNI	CGCG	1 cut(s)	59
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	2 cut(s)	248, 309
BspQI	GCTCTTC	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	253, 301
BssNAI	GTATAC	1 cut(s)	265
Bst1107I	GTATAC	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	108, 120
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	155, 334
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	256, 304
BstMBI	GATC	2 cut(s)	253, 301
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 365, 374, 383, 386, 428, 434
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	5 cut(s)	109, 364, 373, 412, 440
BstZ17I	GTATAC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	155, 334
BtsIMutI	CAGTG	2 cut(s)	146, 439
Cac8I	GCNNGC	2 cut(s)	108, 120
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	1 cut(s)	468
CviJI	RGCY	9 cut(s)	74, 79, 106, 122, 178, 240, 251, 359, 431
CviKI_1	RGCY	9 cut(s)	74, 79, 106, 122, 178, 240, 251, 359, 431
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	255, 303
DpnII	GATC	2 cut(s)	253, 301
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	437
FaeI	CATG	1 cut(s)	471
FaiI	YATR	9 cut(s)	33, 210, 224, 265, 279, 299, 370, 372, 469
FatI	CATG	1 cut(s)	467
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	8 cut(s)	72, 123, 378, 387, 390, 423, 426, 429
FokI	GGATG	2 cut(s)	142, 341
Fsp4HI	GCNGC	8 cut(s)	72, 123, 378, 387, 390, 423, 426, 429
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	8 cut(s)	72, 123, 378, 387, 390, 423, 426, 429
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	471
HindIII	AAGCTT	2 cut(s)	104, 238
HinfI	GANTC	2 cut(s)	194, 413
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	4 cut(s)	47, 95, 110, 428
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 365, 374, 383, 386, 428, 434
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	253, 301
LguI	GCTCTTC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	3 cut(s)	424, 445, 451
Lsp1109I	GCAGC	5 cut(s)	109, 364, 373, 412, 440
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	441
MalI	GATC	2 cut(s)	255, 303
MboI	GATC	2 cut(s)	253, 301
MboII	GAAGA	6 cut(s)	284, 299, 365, 375, 422, 440
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	321, 325, 336
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	439
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	7 cut(s)	14, 365, 374, 383, 386, 428, 434
NdeII	GATC	2 cut(s)	253, 301
NlaIII	CATG	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	8 cut(s)	73, 124, 379, 388, 391, 424, 427, 430
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	430
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	8 cut(s)	72, 123, 378, 387, 390, 423, 426, 429
Sau3AI	GATC	2 cut(s)	253, 301
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	439
SetI	ASST	8 cut(s)	81, 108, 124, 180, 242, 253, 361, 443
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	318
SsiI	CCGC	4 cut(s)	59, 71, 390, 423
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	180
TauI	GCSGC	3 cut(s)	74, 392, 425
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	146, 439
TseI	GCWGC	5 cut(s)	122, 377, 386, 425, 428
TspDTI	ATGAA	3 cut(s)	17, 42, 260
TspRI	CASTG	2 cut(s)	146, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.