Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Forward (+)

64442408 .. 64444157

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005028

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCAGCATTTCCTGGATTTGCAGGACAACCCGACCCATTTCGCTGACCCGAAATGGGAATCCAACTCGTCTCCGACTCACCACCACCACCACCTGACTCAGTCCTCCTCCGCCGCCAACGCCAACCTCGACCGCGTCCTCTTCCAAGACCTCGTCGAGATCGTCCCTCTCGTCCAGTCCCTCATCGATCGGAAAGCCAGCAGCTCATTCACGCGCCGCGGTTCGGTCACCTACACCAAGACGCCTTCCAGAGACTCCTTATCCAAAAAAGTGCCGAACAGGAATGGGGCTCAATCCATGCCGGCAAGAAAGAAGAGGGAGAGTGCTAGCAATAACCCGGATGCTGACAGCGTTTTAAGTTTTTCCTCAAGGGCTTCGGCGGCAGAAAAGGATGACGAAGAGTTGGATGCGTTAAGGGTTCAGTTGGAGGATCTGCAGAGGAAATTGTTGGAGAAAGATGAACTTTTGAAGTCGTCGGAGATCTCAAAGAACGAAGTGAGTGCTGTTCAAGCAAAACTTGAGGAACTGAAGCGCCAAGCTGCGCAAAAGGATTCTGTAATCAAGGCTTCGCAGCTACAACTATCTGATGCTAAGATCAAGCTTGCAGACAAGCAAGCTGCTTTGGAAAAGTTACAGTGGGAAGCTATGACATCAAACAAGAGTGCAGAGAAGCTCCAAGGAGAGCTAGACTCTTTGCGAGGAGACATTTCCACAATTATGATCCTATTCGAAGGCTTGGTGAAAACTGATTCTACTGCATCCGCTGAAGATTATGATATTTCACCTTGTACTGTGGATCATCTTCCATATATTGACGATTGGGATGAGTCGCAGATGCAGAGAATGGAAGCTGCTAGAAAAGCTTACGAAGCTGCTGTTGTTGCTGCAAAAGAAAGGCAAGATGAAGAATCTATTGCTGCTGCAGCCAATGCAAGGTTACATCTTCAATCGTTTGTTTTGAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.87

Weight (kDa)

5.57

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	543
AccII	CGCG	3 cut(s)	135, 214, 219
AciI	CCGC	7 cut(s)	111, 114, 133, 217, 219, 380, 762
AclWI	GGATC	3 cut(s)	438, 715, 804
AcuI	CTGAAG	2 cut(s)	548, 786
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	790
AfiI	CCNNNNNNNGG	3 cut(s)	55, 223, 933
AgsI	TTSAA	4 cut(s)	469, 509, 947, 961
AjnI	CCWGG	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	75, 246, 696
AlwI	GGATC	3 cut(s)	438, 715, 804
AspLEI	GCGC	3 cut(s)	216, 534, 544
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	4 cut(s)	71, 220, 751, 774
AsuII	TTCGAA	1 cut(s)	729
AsuNHI	GCTAGC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	75, 246, 696
BfaI	CTAG	3 cut(s)	327, 686, 855
BfmI	CTRYAG	2 cut(s)	434, 921
BfoI	RGCGCY	1 cut(s)	535
BglII	AGATCT	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	14, 338
BmrFI	CCNGG	2 cut(s)	14, 338
BmsI	GCATC	5 cut(s)	331, 397, 577, 767, 825
BmtI	GCTAGC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	2 cut(s)	352, 539
BpuMI	CCSGG	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	217, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 223, 933
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	217, 676
BseGI	GGATG	5 cut(s)	346, 397, 412, 758, 829
BseLI	CCNNNNNNNGG	3 cut(s)	55, 223, 933
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	2 cut(s)	97, 714
BsgI	GTGCAG	1 cut(s)	684
Bsh1236I	CGCG	3 cut(s)	135, 214, 219
Bsh1285I	CGRYCG	2 cut(s)	133, 190
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	2 cut(s)	133, 190
BsiSI	CCGG	2 cut(s)	302, 338
BslFI	GGGAC	2 cut(s)	149, 163
BslI	CCNNNNNNNGG	3 cut(s)	55, 223, 933
BsmAI	GTCTC	3 cut(s)	75, 246, 696
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	149, 163
Bsp119I	TTCGAA	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
BspACI	CCGC	7 cut(s)	111, 114, 133, 217, 219, 380, 762
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	3 cut(s)	135, 214, 219
BspMAI	CTGCAG	2 cut(s)	438, 925
BspOI	GCTAGC	1 cut(s)	330
BspPI	GGATC	3 cut(s)	438, 715, 804
BspT104I	TTCGAA	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	217, 676
BssMI	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	676
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	636, 793
Bst6I	CTCTTC	3 cut(s)	146, 308, 393
BstACI	GRCGYC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	5 cut(s)	199, 303, 328, 603, 615
BstDEI	CTNAG	2 cut(s)	99, 591
BstDSI	CCRYGG	1 cut(s)	217
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	346, 397, 412, 758, 829
BstFNI	CGCG	3 cut(s)	135, 214, 219
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	3 cut(s)	216, 534, 544
BstKTI	GATC	7 cut(s)	162, 190, 433, 483, 597, 723, 799
BstMAI	GTCTC	3 cut(s)	75, 246, 696
BstMBI	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
BstMCI	CGRYCG	2 cut(s)	133, 190
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 380, 509, 860, 869, 881, 923, 929
BstNI	CCWGG	1 cut(s)	14
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	12, 336
BstSFI	CTRYAG	2 cut(s)	434, 921
BstUI	CGCG	3 cut(s)	135, 214, 219
BstX2I	RGATCY	2 cut(s)	430, 480
BstYI	RGATCY	2 cut(s)	430, 480
Bsu15I	ATCGAT	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	346, 397, 412, 758, 829
BtsIMutI	CAGTG	1 cut(s)	641
Cac8I	GCNNGC	5 cut(s)	199, 303, 328, 603, 615
CfoI	GCGC	3 cut(s)	216, 534, 544
Cfr10I	RCCGGY	1 cut(s)	301
Cfr42I	CCGCGG	1 cut(s)	220
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	124, 250
Csp6I	GTAC	1 cut(s)	789
CviAII	CATG	1 cut(s)	298
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	2 cut(s)	99, 591
DpnI	GATC	7 cut(s)	161, 189, 432, 482, 596, 722, 798
DpnII	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
Eam1104I	CTCTTC	3 cut(s)	146, 308, 393
EarI	CTCTTC	3 cut(s)	146, 308, 393
EciI	GGCGGA	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	548, 786
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	301
FaiI	YATR	6 cut(s)	299, 647, 719, 774, 808, 810
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 501, 533
FaqI	GGGAC	2 cut(s)	149, 163
FatI	CATG	1 cut(s)	297
FokI	GGATG	5 cut(s)	353, 404, 419, 745, 836
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	3 cut(s)	327, 686, 855
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	3 cut(s)	215, 533, 543
HaeII	RGCGCY	1 cut(s)	535
HapII	CCGG	2 cut(s)	302, 338
HgaI	GACGC	2 cut(s)	124, 250
HhaI	GCGC	3 cut(s)	216, 534, 544
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	3 cut(s)	214, 532, 542
HinP1I	GCGC	3 cut(s)	214, 532, 542
HindIII	AAGCTT	2 cut(s)	599, 861
HinfI	GANTC	9 cut(s)	59, 76, 97, 254, 551, 689, 749, 827, 908
HpaII	CCGG	2 cut(s)	302, 338
HphI	GGTGA	4 cut(s)	71, 220, 751, 774
Hpy188I	TCNGA	4 cut(s)	75, 192, 478, 586
Hpy188III	TCNNGA	2 cut(s)	157, 249
Hpy99I	CGWCG	2 cut(s)	158, 478
HpyAV	CCTTC	2 cut(s)	255, 725
HpyCH4III	ACNGT	2 cut(s)	636, 793
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 380, 509, 860, 869, 881, 923, 929
HpyF3I	CTNAG	2 cut(s)	99, 591
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	3 cut(s)	214, 532, 542
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
LmnI	GCTCC	1 cut(s)	678
LpnPI	CCDG	9 cut(s)	8, 26, 107, 188, 211, 262, 265, 315, 351
LweI	GCATC	5 cut(s)	331, 397, 577, 767, 825
MaeI	CTAG	3 cut(s)	327, 686, 855
MaeIII	GTNAC	3 cut(s)	226, 630, 936
MalI	GATC	7 cut(s)	161, 189, 432, 482, 596, 722, 798
MboI	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
MboII	GAAGA	7 cut(s)	133, 325, 410, 779, 794, 917, 935
MflI	RGATCY	2 cut(s)	430, 480
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	2 cut(s)	443, 714
MlyI	GAGTC	5 cut(s)	70, 91, 248, 683, 836
MmeI	TCCRAC	6 cut(s)	87, 98, 384, 405, 429, 456
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	2 cut(s)	356, 413
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	2 cut(s)	219, 764
MspI	CCGG	2 cut(s)	302, 338
MspR9I	CCNGG	2 cut(s)	14, 338
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	3 cut(s)	135, 214, 219
MwoI	GCNNNNNNNGC	8 cut(s)	119, 380, 509, 860, 869, 881, 923, 929
NaeI	GCCGGC	1 cut(s)	303
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
NgoMIV	GCCGGC	1 cut(s)	301
NheI	GCTAGC	1 cut(s)	326
NlaIII	CATG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	226
NsbI	TGCGCA	1 cut(s)	543
NspV	TTCGAA	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 159, 168
PdiI	GCCGGC	1 cut(s)	303
PfeI	GAWTC	4 cut(s)	59, 551, 749, 908
PflFI	GACNNNGTC	3 cut(s)	100, 134, 152
PfoI	TCCNGGA	1 cut(s)	12
Ple19I	CGATCG	1 cut(s)	190
PleI	GAGTC	5 cut(s)	70, 91, 248, 683, 835
PpsI	GAGTC	5 cut(s)	70, 91, 248, 683, 835
Psp6I	CCWGG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	12
PstI	CTGCAG	2 cut(s)	438, 925
PsuI	RGATCY	2 cut(s)	430, 480
PsyI	GACNNNGTC	3 cut(s)	100, 134, 152
PvuI	CGATCG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
RseI	CAYNNNNRTG	1 cut(s)	716
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	356, 413
Sau3AI	GATC	7 cut(s)	159, 187, 430, 480, 594, 720, 796
SchI	GAGTC	5 cut(s)	70, 91, 248, 683, 836
ScrFI	CCNGG	2 cut(s)	14, 338
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	5 cut(s)	331, 397, 577, 767, 825
SfcI	CTRYAG	2 cut(s)	434, 921
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	729
SgrBI	CCGCGG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	2 cut(s)	367, 518
SmoI	CTYRAG	2 cut(s)	367, 518
Sse9I	AATT	2 cut(s)	443, 714
SsiI	CCGC	7 cut(s)	111, 114, 133, 217, 219, 380, 762
SspMI	CTAG	3 cut(s)	327, 686, 855
StyD4I	CCNGG	2 cut(s)	12, 336
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	636, 793
TaqI	TCGA	4 cut(s)	129, 156, 186, 729
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	443, 714
TatI	WGTACW	1 cut(s)	788
TauI	GCSGC	3 cut(s)	116, 219, 383
TfiI	GAWTC	4 cut(s)	59, 551, 749, 908
Tru1I	TTAA	2 cut(s)	356, 413
Tru9I	TTAA	2 cut(s)	356, 413
TscAI	CASTG	1 cut(s)	641
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	474, 918
TspRI	CASTG	1 cut(s)	641
Tth111I	GACNNNGTC	3 cut(s)	100, 134, 152
XspI	CTAG	3 cut(s)	327, 686, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.