Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

11592799 .. 11594732

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG064900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTTTCTTATTTTCTCTCCCACCATGAATTCAACCCCACCCTCTTTCTCGTCTGTACCCACCTCGTCCCCTCCCCCACGATCACCCATCAAAACTCTGCTATGCTTCCTCCTTCATTATATGGTCATTTCAGGGACTTGACTGACCACCACAACCACCTGACTTTGTCCTCCTTCGCCGCCAACGGCAACATCGACCGCGTCCTCTTCCAAGAGCTCATCGAGATCATCCCTCTTGTCCAGTCCCTCATCGATCCGGAAGCCAGCAGTTCATTTACGCGGCGCGGTTCAGTCACCTACAGCAAGACACCTTCGAGAGACTCCTTATCCAACAAAAATGTGTGCAACACGTTAAAAAAAGGGCTGGGCATTGGTCGAAAGATTACCAGAAGATGGAAGCTTCAAAATTGGCCTTGTGGTTTTCTTTGTGACTCACCTCCAAAATCAGTGAAGTACCTCCATAAAAAGAACAATATAGTTAGTAGCAAAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.72

Weight (kDa)

9.73

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccII	CGCG	3 cut(s)	201, 280, 285
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	4 cut(s)	180, 199, 280, 285
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	2 cut(s)	58, 455
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	34, 404
AluBI	AGCT	2 cut(s)	217, 400
AluI	AGCT	2 cut(s)	217, 400
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	248
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	76, 286, 426
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BccI	CCATC	2 cut(s)	96, 387
BceAI	ACGGC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	2 cut(s)	180, 281
BlsI	GCNGC	2 cut(s)	181, 282
Bsa29I	ATCGAT	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	241
BseAI	TCCGGA	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	252
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	3 cut(s)	201, 280, 285
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	3 cut(s)	53, 149, 229
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	3 cut(s)	53, 149, 229
BsnI	GGCC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	81, 225, 253
BspACI	CCGC	4 cut(s)	180, 199, 280, 285
BspANI	GGCC	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	256
BspFNI	CGCG	3 cut(s)	201, 280, 285
BspPI	GGATC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	81, 225, 253
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	228
BstFNI	CGCG	3 cut(s)	201, 280, 285
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	3 cut(s)	84, 228, 256
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	3 cut(s)	81, 225, 253
BstMCI	CGRYCG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	298
BstUI	CGCG	3 cut(s)	201, 280, 285
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	412
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	285
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	57, 454
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	5 cut(s)	217, 263, 364, 400, 412
CviKI_1	RGCY	5 cut(s)	217, 263, 364, 400, 412
CviQI	GTAC	2 cut(s)	57, 454
DpnI	GATC	3 cut(s)	83, 227, 255
DpnII	GATC	3 cut(s)	81, 225, 253
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	29
FaiI	YATR	6 cut(s)	27, 104, 121, 123, 462, 476
FaqI	GGGAC	3 cut(s)	53, 149, 229
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	180, 281
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	180, 281
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	180, 281
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	320, 431
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	3 cut(s)	76, 286, 426
Hpy188III	TCNNGA	3 cut(s)	223, 257, 315
HpyAV	CCTTC	3 cut(s)	123, 184, 321
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	81, 225, 253
LpnPI	CCDG	7 cut(s)	118, 173, 254, 270, 277, 350, 400
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	292, 428
MalI	GATC	3 cut(s)	83, 227, 255
MboI	GATC	3 cut(s)	81, 225, 253
MboII	GAAGA	2 cut(s)	199, 402
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	29, 406
MlyI	GAGTC	2 cut(s)	314, 425
MmeI	TCCRAC	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	1 cut(s)	353
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	3 cut(s)	201, 280, 285
NdeII	GATC	3 cut(s)	81, 225, 253
NlaIII	CATG	1 cut(s)	29
NmuCI	GTSAC	2 cut(s)	292, 428
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PflFI	GACNNNGTC	2 cut(s)	166, 200
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	181, 282
PleI	GAGTC	2 cut(s)	314, 425
PpsI	GAGTC	2 cut(s)	314, 425
Psp124BI	GAGCTC	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	364
PsyI	GACNNNGTC	2 cut(s)	166, 200
RsaI	GTAC	2 cut(s)	58, 455
RsaNI	GTAC	2 cut(s)	57, 454
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	180, 281
Sau3AI	GATC	3 cut(s)	81, 225, 253
SchI	GAGTC	2 cut(s)	314, 425
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	9 cut(s)	66, 162, 219, 299, 313, 353, 402, 439, 459
SfcI	CTRYAG	1 cut(s)	298
Sse9I	AATT	2 cut(s)	29, 406
SsiI	CCGC	4 cut(s)	180, 199, 280, 285
SstI	GAGCTC	1 cut(s)	219
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	5 cut(s)	195, 222, 252, 314, 376
TasI	AATT	2 cut(s)	29, 406
TauI	GCSGC	2 cut(s)	182, 283
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	453
TseFI	GTSAC	2 cut(s)	292, 428
Tsp45I	GTSAC	2 cut(s)	292, 428
TspDTI	ATGAA	3 cut(s)	42, 105, 261
TspRI	CASTG	1 cut(s)	453
Tth111I	GACNNNGTC	2 cut(s)	166, 200
Van91I	CCANNNNNTGG	1 cut(s)	393
XapI	RAATTY	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.