Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

118700 .. 120427

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003610.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgcagcacttactggatttgcaggaaaaccggacccatttcgctgacccgaaatgggaatccaactcgtctccgactcaccaccacctgactcagtcctccaacgccaacgccaacgccaacgccaacctcgaccgcgtcctcttccaagacctcgtcgagatcgtcccgctcgtccagtccctcatcgatcggaaagccagcagctcattcacgcgccgcggttcggtcacctacaccaagacgccttccagagactccttatccaaaaaagtgccgaacaggaatggggctcaatccatgccggcaagaaagaagagggagagtgctagcaataacccggatgctgacagcgttttaagtttttcctcaaaggcttcggcggcagaaaaggatgacgacgaagagttggatgccttaagggttcagttggaggatctgcagaggaaattgttggagaaggatgaacttttgaagtcgtcggagatctcaaagaacgaagtgagtgctgttcaagcaaaacttgaggaactgaagcgccaagctgcgcaaaaggattctgtaatcaaggcttctcagctacaactatctgatgcaaagatcaagcttgcagacaagcaagctgctttggaaaagttacagtgggaagctatgacatcaaacaagagtgcagataagctccaaggagagctagactctttgcgaggagacatttccacaattatgatcctattcgaaggcttggtgaaaactgattctactccatccgctgaagattatgatatttcaccttgtactgtggatcatcttccatatattgacgattgggatgagtcgcagatgcagagaatggaagctgctagaaaagcttacgaagctgctgttgttgctgcaaaagaaaggcaagatgaagaatctattgctgctgcagccaatgcaaggttacatcttcaatcgtttgttttgaaaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.06

Weight (kDa)

5.42

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	549
AccBSI	CCGCTC	1 cut(s)	172
AccII	CGCG	3 cut(s)	138, 217, 222
AciI	CCGC	6 cut(s)	136, 170, 220, 222, 383, 768
AclWI	GGATC	3 cut(s)	444, 721, 810
AcuI	CTGAAG	2 cut(s)	554, 792
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	796
AfiI	CCNNNNNNNGG	3 cut(s)	55, 226, 939
AflII	CTTAAG	1 cut(s)	418
AgsI	TTSAA	4 cut(s)	475, 515, 953, 967
Alw26I	GTCTC	3 cut(s)	75, 249, 702
AlwI	GGATC	3 cut(s)	444, 721, 810
AspLEI	GCGC	3 cut(s)	219, 540, 550
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	4 cut(s)	71, 223, 757, 780
AsuII	TTCGAA	1 cut(s)	735
AsuNHI	GCTAGC	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	295
BccI	CCATC	1 cut(s)	772
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	3 cut(s)	75, 249, 702
BfaI	CTAG	3 cut(s)	330, 692, 861
BfmI	CTRYAG	2 cut(s)	440, 927
BfoI	RGCGCY	1 cut(s)	541
BfrI	CTTAAG	1 cut(s)	418
BglII	AGATCT	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	4 cut(s)	334, 403, 583, 831
BmtI	GCTAGC	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
Bpu14I	TTCGAA	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	220, 682
BsaWI	WCCGGW	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 226, 939
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	18, 178
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	220, 682
BseGI	GGATG	6 cut(s)	349, 400, 418, 469, 764, 835
BseLI	CCNNNNNNNGG	3 cut(s)	55, 226, 939
BseMII	CTCAG	2 cut(s)	107, 590
BseNI	ACTGG	2 cut(s)	18, 178
BseRI	GAGGAG	1 cut(s)	720
BsgI	GTGCAG	1 cut(s)	690
Bsh1236I	CGCG	3 cut(s)	138, 217, 222
Bsh1285I	CGRYCG	2 cut(s)	136, 193
BshVI	ATCGAT	1 cut(s)	189
BsiEI	CGRYCG	2 cut(s)	136, 193
BsiSI	CCGG	3 cut(s)	31, 305, 341
BslFI	GGGAC	2 cut(s)	152, 166
BslI	CCNNNNNNNGG	3 cut(s)	55, 226, 939
BsmAI	GTCTC	3 cut(s)	75, 249, 702
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	152, 166
Bsp119I	TTCGAA	1 cut(s)	735
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
BspACI	CCGC	6 cut(s)	136, 170, 220, 222, 383, 768
BspCNI	CTCAG	2 cut(s)	106, 589
BspDI	ATCGAT	1 cut(s)	189
BspFNI	CGCG	3 cut(s)	138, 217, 222
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	2 cut(s)	444, 931
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	3 cut(s)	444, 721, 810
BspT104I	TTCGAA	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	418
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	18, 178
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	220, 682
BssMI	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	682
Bst4CI	ACNGT	2 cut(s)	642, 799
Bst6I	CTCTTC	3 cut(s)	149, 311, 399
BstACI	GRCGYC	1 cut(s)	245
BstAFI	CTTAAG	1 cut(s)	418
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstBI	TTCGAA	1 cut(s)	735
BstC8I	GCNNGC	5 cut(s)	202, 306, 331, 609, 621
BstDEI	CTNAG	2 cut(s)	93, 576
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	229
BstF5I	GGATG	6 cut(s)	349, 400, 418, 469, 764, 835
BstFNI	CGCG	3 cut(s)	138, 217, 222
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	3 cut(s)	219, 540, 550
BstKTI	GATC	7 cut(s)	165, 193, 439, 489, 603, 729, 805
BstMAI	GTCTC	3 cut(s)	75, 249, 702
BstMBI	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
BstMCI	CGRYCG	2 cut(s)	136, 193
BstMWI	GCNNNNNNNGC	7 cut(s)	383, 515, 866, 875, 887, 929, 935
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	2 cut(s)	440, 927
BstUI	CGCG	3 cut(s)	138, 217, 222
BstX2I	RGATCY	2 cut(s)	436, 486
BstYI	RGATCY	2 cut(s)	436, 486
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	6 cut(s)	349, 400, 418, 469, 764, 835
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	5 cut(s)	202, 306, 331, 609, 621
CfoI	GCGC	3 cut(s)	219, 540, 550
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	33
Cfr42I	CCGCGG	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	2 cut(s)	127, 253
Csp6I	GTAC	1 cut(s)	795
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	1 cut(s)	795
DdeI	CTNAG	2 cut(s)	93, 576
DpnI	GATC	7 cut(s)	164, 192, 438, 488, 602, 728, 804
DpnII	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
Eam1104I	CTCTTC	3 cut(s)	149, 311, 399
EarI	CTCTTC	3 cut(s)	149, 311, 399
Eco130I	CCWWGG	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	554, 792
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	682
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	682
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	1 cut(s)	304
FaiI	YATR	6 cut(s)	302, 653, 725, 780, 814, 816
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	2 cut(s)	152, 166
FatI	CATG	1 cut(s)	300
FauI	CCCGC	1 cut(s)	177
FokI	GGATG	6 cut(s)	356, 407, 425, 476, 751, 842
FriOI	GRGCYC	1 cut(s)	295
FspBI	CTAG	3 cut(s)	330, 692, 861
FspI	TGCGCA	1 cut(s)	549
GlaI	GCGC	3 cut(s)	218, 539, 549
HaeII	RGCGCY	1 cut(s)	541
HapII	CCGG	3 cut(s)	31, 305, 341
HgaI	GACGC	2 cut(s)	127, 253
HhaI	GCGC	3 cut(s)	219, 540, 550
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	3 cut(s)	217, 538, 548
HinP1I	GCGC	3 cut(s)	217, 538, 548
HindIII	AAGCTT	2 cut(s)	605, 867
HinfI	GANTC	9 cut(s)	59, 76, 91, 257, 557, 695, 755, 833, 914
HpaII	CCGG	3 cut(s)	31, 305, 341
HphI	GGTGA	4 cut(s)	71, 223, 757, 780
Hpy188I	TCNGA	4 cut(s)	75, 195, 484, 592
Hpy188III	TCNNGA	2 cut(s)	160, 252
Hpy99I	CGWCG	3 cut(s)	161, 404, 484
HpyAV	CCTTC	3 cut(s)	258, 454, 731
HpyCH4III	ACNGT	2 cut(s)	642, 799
HpyF10VI	GCNNNNNNNGC	7 cut(s)	383, 515, 866, 875, 887, 929, 935
HpyF3I	CTNAG	2 cut(s)	93, 576
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	3 cut(s)	217, 538, 548
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
LmnI	GCTCC	1 cut(s)	684
LpnPI	CCDG	9 cut(s)	8, 44, 101, 191, 214, 265, 268, 318, 354
LweI	GCATC	4 cut(s)	334, 403, 583, 831
MaeI	CTAG	3 cut(s)	330, 692, 861
MaeIII	GTNAC	3 cut(s)	229, 636, 942
MalI	GATC	7 cut(s)	164, 192, 438, 488, 602, 728, 804
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
MboII	GAAGA	7 cut(s)	136, 328, 416, 785, 800, 923, 941
MflI	RGATCY	2 cut(s)	436, 486
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	449, 720
MlyI	GAGTC	5 cut(s)	70, 85, 251, 689, 842
MmeI	TCCRAC	7 cut(s)	87, 98, 126, 390, 411, 435, 462
MroNI	GCCGGC	1 cut(s)	304
MseI	TTAA	2 cut(s)	359, 419
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	2 cut(s)	222, 770
MspCI	CTTAAG	1 cut(s)	418
MspI	CCGG	3 cut(s)	31, 305, 341
MspR9I	CCNGG	1 cut(s)	341
MvnI	CGCG	3 cut(s)	138, 217, 222
MwoI	GCNNNNNNNGC	7 cut(s)	383, 515, 866, 875, 887, 929, 935
NaeI	GCCGGC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
NgoMIV	GCCGGC	1 cut(s)	304
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	549
NspV	TTCGAA	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 162, 171
PdiI	GCCGGC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	59, 557, 755, 914
PflFI	GACNNNGTC	3 cut(s)	94, 137, 155
Ple19I	CGATCG	1 cut(s)	193
PleI	GAGTC	5 cut(s)	70, 85, 251, 689, 841
PpsI	GAGTC	5 cut(s)	70, 85, 251, 689, 841
PspEI	GGTNACC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	2 cut(s)	444, 931
PsuI	RGATCY	2 cut(s)	436, 486
PsyI	GACNNNGTC	3 cut(s)	94, 137, 155
PvuI	CGATCG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	796
RsaNI	GTAC	1 cut(s)	795
RseI	CAYNNNNRTG	1 cut(s)	722
SacII	CCGCGG	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	359, 419
Sau3AI	GATC	7 cut(s)	162, 190, 436, 486, 600, 726, 802
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	5 cut(s)	70, 85, 251, 689, 842
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	4 cut(s)	334, 403, 583, 831
SfcI	CTRYAG	2 cut(s)	440, 927
Sfr303I	CCGCGG	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	735
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	418, 524
SmoI	CTYRAG	2 cut(s)	418, 524
Sse9I	AATT	2 cut(s)	449, 720
SsiI	CCGC	6 cut(s)	136, 170, 220, 222, 383, 768
SspMI	CTAG	3 cut(s)	330, 692, 861
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	2 cut(s)	642, 799
TaqI	TCGA	4 cut(s)	132, 159, 189, 735
TaqII	GACCGA	1 cut(s)	217
TasI	AATT	2 cut(s)	449, 720
TatI	WGTACW	1 cut(s)	794
TauI	GCSGC	2 cut(s)	222, 386
TfiI	GAWTC	4 cut(s)	59, 557, 755, 914
Tru1I	TTAA	2 cut(s)	359, 419
Tru9I	TTAA	2 cut(s)	359, 419
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	480, 924
TspRI	CASTG	1 cut(s)	647
Tth111I	GACNNNGTC	3 cut(s)	94, 137, 155
Vha464I	CTTAAG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	33
XspI	CTAG	3 cut(s)	330, 692, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.