Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004445

Physical Location & Seq

Genomic Coordinates Reverse (-)

2600443 .. 2602935

Gene Structure 2493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G08120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTATGAGCAGCAGCAACATTTCATGGATTTGCAAAGCGATTCTGGGTTTGGGGACGATAGCTCCTGGCTCGCCGGCGATGACGATCTTCGTCTCTCTCCTCACCAATCTGCCGCCGGTACGAACTCCGGCAATGAGAATCTAGATCGTCGTCTCTTAAAAGATCTCGTCGAGATGGTTCCCCTTATCGAGCATTACATGGAACATAAAGAAAGGAGTTCGTTTAAGCGGCGTGGTTCCATGATCTACACTAAGATGCCTTCAAAAGAATCCTTGTCCCGAAGGGGAAGAAATGCTTCTCAAACAGTCCCAGGAAGAAAGAAGAGAGACCAAGAGGGAAATGACGATGTTATGAACAATTCTAGGGAAGATGATGAAAACGCAAAGGCTTTGGCTGGTGCAGAAAAGGAAGAAATGAGTAGACTAAGAGAGCAAGTGAATGACTTGCAGACAAAATTATCGGAGAAAGAAGAGGTTTTAAAGTCAATGGAGATGTCAAAGAATCAGGTAAACGAGATACAAGAAAAGCTTGAAGCAACAAATCGATTGGTTGCTGAGAAGGATATGTTGATCAAGTCTATGCAGTTACAATTATCGGACACAAAGATCAAACTTGCTGACAAGCAAGCAGCCCTTGAGAAGACTCAATGGGAAGCAAAGACAACAGGAACAAGAGCAATCAAGCTTCAAGAACAGCTAGATGCTGTTGAAGGAGACATCTCTACATTCACACGGGTGTTCGAAACTTTGGCAAAAACTGATTCCAAGAAACCCGATAGGGATTATGATGCAGTCCCATATGAATTTGATCATCTTCCATATTTAGACGATGTAGATGAAACTGACCTGAGGAAAATGGAAGAAGCAAGATTAGCTTATGTAGCAGCAGTGAATACCGCAAAGGAACGAGAAGATGAAGAATCTCTGGTCATGGCTGCTCAAGCTCGAGCTTACCTGCAATCACTAGCCTTTACATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0002230 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0007389 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009615 GO:0009628 GO:0009987 GO:0010035 GO:0010375 GO:0010496 GO:0010497 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033043 GO:0042221 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0043900 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048856 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051179 GO:0051223 GO:0051224 GO:0051234 GO:0051493 GO:0051607 GO:0051704 GO:0051707 GO:0065007 GO:0070201 GO:0071840 GO:0080134 GO:0090087 GO:0097159 GO:0097435 GO:0098542 GO:1901363 GO:1901700 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

37.35

Weight (kDa)

4.97

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08120 AT5G08120
fragaria_vesca	FvH4_5g13401
malus_domestica	MD06G1205700.v1.1 MD14G1216600.v1.1
prunus_persica	Prupe.5G210000_v2.0.a1 Prupe.5G210000_v2.0.a1 Prupe.8G074000_v2.0.a1
pyrus_communis	pycom06g18350 pycom14g17940
rosa_chinensis	RchiOBHm_Chr4g0401411 RchiOBHm_Chr4g0419941 RchiOBHm_Chr7g0183731 RchiOBHm_Chr7g0231071
rosa_laevigata	RLG00000005028 RLG00000017072
rosa_multiflora	Rmu_co7992950.1_g000001 Rmu_sc0003610.1_g000029
rosa_roxburghii	Rroxscaffold_3G00270290
rosa_rugosa	Rorug06G0456900 Rorug06G0459600 Rorug07G0184000
rosa_samantha	Rh1AG064200 Rh4BG064900 Rh4BG101700 Rh4CG071700 Rh6AG168600 Rh7AG060500 Rh7BG060600 Rh7CG062200 Rh7DG060600
rosa_wichuraiana	Rw7G005020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	963
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	3 cut(s)	114, 229, 897
AcsI	RAATTY	1 cut(s)	803
AfaI	GTAC	1 cut(s)	121
AgsI	TTSAA	4 cut(s)	264, 533, 689, 710
AjnI	CCWGG	2 cut(s)	65, 310
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	7 cut(s)	63, 529, 685, 697, 875, 944, 950
AluI	AGCT	7 cut(s)	63, 529, 685, 697, 875, 944, 950
Alw26I	GTCTC	4 cut(s)	98, 158, 321, 708
Ama87I	CYCGRG	1 cut(s)	945
ApeKI	GCWGC	5 cut(s)	10, 13, 629, 884, 935
ApoI	RAATTY	1 cut(s)	803
Asp700I	GAANNNNTTC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	741
AvaI	CYCGRG	1 cut(s)	945
AxyI	CCTNAGG	1 cut(s)	848
BbsI	GAAGAC	1 cut(s)	647
BbvI	GCAGC	5 cut(s)	22, 25, 641, 896, 922
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	67, 312
BclI	TGATCA	2 cut(s)	570, 808
BcoDI	GTCTC	4 cut(s)	98, 158, 321, 708
BfaI	CTAG	4 cut(s)	143, 363, 698, 965
BfuAI	ACCTGC	1 cut(s)	963
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	7 cut(s)	11, 14, 114, 230, 630, 885, 936
BlsI	GCNGC	7 cut(s)	12, 15, 115, 231, 631, 886, 937
Bme1390I	CCNGG	2 cut(s)	67, 312
BmeT110I	CYCGRG	1 cut(s)	945
BmiI	GGNNCC	2 cut(s)	180, 238
BmrFI	CCNGG	2 cut(s)	67, 312
BmsI	GCATC	3 cut(s)	246, 691, 778
BpiI	GAAGAC	1 cut(s)	647
Bpu14I	TTCGAA	1 cut(s)	741
BpuEI	CTTGAG	2 cut(s)	656, 924
Bsa29I	ATCGAT	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse118I	RCCGGY	2 cut(s)	74, 116
Bse21I	CCTNAGG	1 cut(s)	848
Bse3DI	GCAATG	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	67, 312
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	546, 839
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	5 cut(s)	22, 25, 641, 896, 922
BsgI	GTGCAG	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	945
BsiSI	CCGG	3 cut(s)	75, 117, 129
BslFI	GGGAC	4 cut(s)	68, 262, 293, 779
BsmAI	GTCTC	4 cut(s)	98, 158, 321, 708
BsmBI	CGTCTC	2 cut(s)	98, 158
BsmFI	GGGAC	4 cut(s)	68, 262, 293, 779
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	945
Bsp119I	TTCGAA	1 cut(s)	741
Bsp143I	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
BspACI	CCGC	3 cut(s)	114, 229, 897
BspCNI	CTCAG	2 cut(s)	547, 840
BspDI	ATCGAT	1 cut(s)	544
BspLI	GGNNCC	2 cut(s)	180, 238
BspMI	ACCTGC	1 cut(s)	963
BspT104I	TTCGAA	1 cut(s)	741
BspTNI	GGTCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	139
BsrFI	RCCGGY	2 cut(s)	74, 116
BssAI	RCCGGY	2 cut(s)	74, 116
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
Bst2UI	CCWGG	2 cut(s)	67, 312
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	317, 465
BstBI	TTCGAA	1 cut(s)	741
BstC8I	GCNNGC	3 cut(s)	72, 76, 627
BstDEI	CTNAG	4 cut(s)	252, 425, 555, 848
BstKTI	GATC	7 cut(s)	88, 148, 166, 246, 573, 609, 811
BstMAI	GTCTC	4 cut(s)	98, 158, 321, 708
BstMBI	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	872, 881, 941
BstNI	CCWGG	2 cut(s)	67, 312
BstSCI	CCNGG	2 cut(s)	65, 310
BstV1I	GCAGC	5 cut(s)	22, 25, 641, 896, 922
BstV2I	GAAGAC	1 cut(s)	647
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	544
Bsu36I	CCTNAGG	1 cut(s)	848
BsuTUI	ATCGAT	1 cut(s)	544
BtgZI	GCGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	1 cut(s)	894
BveI	ACCTGC	1 cut(s)	963
Cac8I	GCNNGC	3 cut(s)	72, 76, 627
Cfr10I	RCCGGY	2 cut(s)	74, 116
ClaI	ATCGAT	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	4 cut(s)	25, 199, 241, 931
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	4 cut(s)	252, 425, 555, 848
DpnI	GATC	7 cut(s)	87, 147, 165, 245, 572, 608, 810
DpnII	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
DraI	TTTAAA	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	317, 465
EarI	CTCTTC	2 cut(s)	317, 465
Eco31I	GGTCTC	1 cut(s)	321
Eco81I	CCTNAGG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	945
EcoRII	CCWGG	2 cut(s)	65, 310
Esp3I	CGTCTC	2 cut(s)	98, 158
FaeI	CATG	4 cut(s)	28, 202, 244, 934
FalI	AAGNNNNNCTT	8 cut(s)	280, 312, 513, 545, 618, 650, 859, 891
FaqI	GGGAC	4 cut(s)	68, 262, 293, 779
FatI	CATG	4 cut(s)	24, 198, 240, 930
FauNDI	CATATG	1 cut(s)	799
FbaI	TGATCA	2 cut(s)	570, 808
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	7 cut(s)	11, 14, 114, 230, 630, 885, 936
Fsp4HI	GCNGC	7 cut(s)	11, 14, 114, 230, 630, 885, 936
FspBI	CTAG	4 cut(s)	143, 363, 698, 965
GluI	GCNGC	7 cut(s)	11, 14, 114, 230, 630, 885, 936
HapII	CCGG	3 cut(s)	75, 117, 129
Hin1II	CATG	4 cut(s)	28, 202, 244, 934
HindIII	AAGCTT	2 cut(s)	527, 683
HinfI	GANTC	7 cut(s)	41, 139, 269, 502, 643, 761, 920
HpaII	CCGG	3 cut(s)	75, 117, 129
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	422, 511
Hpy188I	TCNGA	2 cut(s)	463, 598
Hpy188III	TCNNGA	4 cut(s)	143, 172, 279, 689
Hpy8I	GTNNAC	2 cut(s)	422, 511
Hpy99I	CGWCG	2 cut(s)	153, 173
HpyAV	CCTTC	4 cut(s)	270, 276, 553, 704
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	34, 401, 448, 583, 791, 958
HpyF10VI	GCNNNNNNNGC	3 cut(s)	872, 881, 941
HpyF3I	CTNAG	4 cut(s)	252, 425, 555, 848
Hsp92II	CATG	4 cut(s)	28, 202, 244, 934
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Ksp22I	TGATCA	2 cut(s)	570, 808
Kzo9I	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	5 cut(s)	22, 25, 641, 896, 922
LweI	GCATC	3 cut(s)	246, 691, 778
MaeI	CTAG	4 cut(s)	143, 363, 698, 965
MaeIII	GTNAC	1 cut(s)	585
MalI	GATC	7 cut(s)	87, 147, 165, 245, 572, 608, 810
MboI	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	4 cut(s)	358, 455, 590, 803
MlyI	GAGTC	1 cut(s)	637
MnlI	CCTC	4 cut(s)	111, 328, 466, 843
MreI	CGCCGGCG	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	4 cut(s)	158, 225, 479, 979
MslI	CAYNNNNRTG	2 cut(s)	254, 734
MspI	CCGG	3 cut(s)	75, 117, 129
MspR9I	CCNGG	2 cut(s)	67, 312
MvaI	CCWGG	2 cut(s)	67, 312
MwoI	GCNNNNNNNGC	3 cut(s)	872, 881, 941
NaeI	GCCGGC	1 cut(s)	76
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	4 cut(s)	28, 202, 244, 934
NlaIV	GGNNCC	2 cut(s)	180, 238
NspV	TTCGAA	1 cut(s)	741
OliI	CACNNNNGTG	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	945
PdiI	GCCGGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	6 cut(s)	41, 139, 269, 502, 761, 920
PkrI	GCNGC	7 cut(s)	12, 15, 115, 231, 631, 886, 937
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	65, 310
PspGI	CCWGG	2 cut(s)	65, 310
PspN4I	GGNNCC	2 cut(s)	180, 238
PspXI	VCTCGAGB	1 cut(s)	945
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	2 cut(s)	254, 734
SaqAI	TTAA	4 cut(s)	158, 225, 479, 979
SatI	GCNGC	7 cut(s)	11, 14, 114, 230, 630, 885, 936
Sau3AI	GATC	7 cut(s)	85, 145, 163, 243, 570, 606, 808
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	2 cut(s)	67, 312
SfaNI	GCATC	3 cut(s)	246, 691, 778
Sfr274I	CTCGAG	1 cut(s)	945
SfuI	TTCGAA	1 cut(s)	741
SgrAI	CRCCGGYG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	945
SmiMI	CAYNNNNRTG	2 cut(s)	254, 734
SmlI	CTYRAG	3 cut(s)	635, 939, 945
SmoI	CTYRAG	3 cut(s)	635, 939, 945
Sse9I	AATT	4 cut(s)	358, 455, 590, 803
SsiI	CCGC	3 cut(s)	114, 229, 897
SspMI	CTAG	4 cut(s)	143, 363, 698, 965
StyD4I	CCNGG	2 cut(s)	65, 310
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	5 cut(s)	171, 189, 544, 741, 946
TasI	AATT	4 cut(s)	358, 455, 590, 803
TauI	GCSGC	2 cut(s)	116, 232
TfiI	GAWTC	6 cut(s)	41, 139, 269, 502, 761, 920
Tru1I	TTAA	4 cut(s)	158, 225, 479, 979
Tru9I	TTAA	4 cut(s)	158, 225, 479, 979
TscAI	CASTG	1 cut(s)	894
TseI	GCWGC	5 cut(s)	10, 13, 629, 884, 935
TspDTI	ATGAA	6 cut(s)	13, 368, 390, 816, 852, 930
TspRI	CASTG	1 cut(s)	894
XapI	RAATTY	1 cut(s)	803
XbaI	TCTAGA	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	945
XmiI	GTMKAC	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	4 cut(s)	143, 363, 698, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.