Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

29992884 .. 29994197

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1216500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTGCAGCACACCATGGACAATGACAAGGCTAGTGAGATGGCGCGTGAAAGGCTGGGCTTCATGTTTCTTGGCTTGCAGGTTTCCTTTGGATGATGAAGCAGCCGATAGATTTTGCCCTGCAACGCCGCAATTGCCAATACGAAACATGGCTTTTGATACGCAGGGCGAAAGCAGAAGCAATGAGACGGGGAAAAAGATGTCGAGGCACAAAAAGTGTGACACAGAGCGACGATTAAGACACGGTCCTAAACAAGTTAAAGACAGCAGTTCCCCGGTCGAAAATACGAGTTCTAATGACTCAAGCTGCAGGCCACATATTTCAGATGAGGAGGAGTATATAGTGTTCTGCTTTAAAGAAGATGGAGCGTTTGAAGTTATGAAAAATGGCAAAGTGGAAGCGTCGAACGTGAGAGATTGCGCGTCAAGAAACTCGCCGAGGCATGTCAATCGGAAGCTTCGTTATGGGGAGGATACAAAGGCAGTTGAAAGGTGTAGCAATGAGGAGAGGTTGACTGGAAAAGCTTATGATATTTACCCCACAAATGATGGAAAATCTATCATCTTTGACCAAAAGGTAGAGACCCTTCTTTTATGTTTCAATTTTTCCTTTCCAAAGAATATGCACGTTCGTTATAAACTGCGATTTGTCTGTACGAAGGAATGTCTGTTTACATGTAAAAGTAATTCTACCTTATATCTTCTTTCCTTGAAATATAATTATTTTGCAAAGGACGAGGAAGACGAGGAAACCTTCTCCGGTCAAGAGCCGCCTCCGAGTATCAATGTCGAGAATCGTCCGACCGTGTCAGTTGAATCAAGCGATTCAAATCAATCGGACGGCAGCACAGGCTCCTTCGCGTTTCCGGTGTTGGGATGGGAATGGACTGGCAGTCCTGTGCAAATGCCGAAACGAGAAGCTATGGACTTGAGAAAGCACAAGGCTCGCTGCATCGGCTTCCAGTTTCAATGCTGTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.6

Weight (kDa)

8.41

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	69
AccII	CGCG	3 cut(s)	45, 422, 860
AciI	CCGC	2 cut(s)	128, 770
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	674
AgsI	TTSAA	7 cut(s)	374, 488, 601, 712, 815, 828, 968
AhdI	GACNNNNNGTC	1 cut(s)	891
AluBI	AGCT	4 cut(s)	306, 457, 524, 920
AluI	AGCT	4 cut(s)	306, 457, 524, 920
Alw26I	GTCTC	2 cut(s)	179, 575
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	5 cut(s)	6, 101, 306, 843, 948
AspLEI	GCGC	2 cut(s)	45, 422
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BbsI	GAAGAC	1 cut(s)	747
BbvI	GCAGC	5 cut(s)	18, 113, 293, 855, 935
BccI	CCATC	4 cut(s)	33, 356, 542, 870
BceAI	ACGGC	1 cut(s)	856
BcgI	CGANNNNNNTGC	4 cut(s)	431, 465, 926, 960
BciVI	GTATCC	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	179, 575
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	307, 973
BfuAI	ACCTGC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	7 cut(s)	7, 102, 128, 307, 770, 844, 949
BlsI	GCNGC	7 cut(s)	8, 103, 129, 308, 771, 845, 950
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	245
BmeRI	GACNNNNNGTC	1 cut(s)	891
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	853
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	960
BpiI	GAAGAC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	286, 949
BpuMI	CCSGG	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	14, 273, 437
BsaWI	WCCGGW	2 cut(s)	758, 865
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	3 cut(s)	520, 892, 961
Bse3DI	GCAATG	2 cut(s)	187, 505
Bse8I	GATNNNNATC	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	14, 273, 437
BseGI	GGATG	2 cut(s)	97, 881
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	2 cut(s)	187, 505
BseNI	ACTGG	3 cut(s)	520, 892, 961
BseRI	GAGGAG	3 cut(s)	344, 347, 518
BseXI	GCAGC	5 cut(s)	18, 113, 293, 855, 935
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	3 cut(s)	45, 422, 860
Bsh1285I	CGRYCG	2 cut(s)	279, 804
BshFI	GGCC	1 cut(s)	313
BsiEI	CGRYCG	2 cut(s)	279, 804
BsiSI	CCGG	3 cut(s)	275, 759, 866
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	2 cut(s)	179, 575
BsmBI	CGTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	575
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	2 cut(s)	128, 770
BspANI	GGCC	1 cut(s)	313
BspFNI	CGCG	3 cut(s)	45, 422, 860
BspLI	GGNNCC	1 cut(s)	853
BspMAI	CTGCAG	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	575
BsrDI	GCAATG	2 cut(s)	187, 505
BsrI	ACTGG	3 cut(s)	520, 892, 961
BssECI	CCNNGG	3 cut(s)	14, 273, 437
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	245, 805
BstC8I	GCNNGC	3 cut(s)	76, 311, 946
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	97, 881
BstFNI	CGCG	3 cut(s)	45, 422, 860
BstHHI	GCGC	2 cut(s)	45, 422
BstMAI	GTCTC	2 cut(s)	179, 575
BstMCI	CGRYCG	2 cut(s)	279, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 133, 849, 954
BstNSI	RCATGY	2 cut(s)	446, 678
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	307, 973
BstUI	CGCG	3 cut(s)	45, 422, 860
BstV1I	GCAGC	5 cut(s)	18, 113, 293, 855, 935
BstV2I	GAAGAC	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	97, 881
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	76, 311, 946
CfoI	GCGC	2 cut(s)	45, 422
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	2 cut(s)	390, 411
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	5 cut(s)	15, 63, 148, 443, 675
CviQI	GTAC	1 cut(s)	654
DraI	TTTAAA	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	891
Eam1105I	GACNNNNNGTC	1 cut(s)	891
Eco130I	CCWWGG	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	5 cut(s)	18, 66, 151, 446, 678
FatI	CATG	5 cut(s)	14, 62, 147, 442, 674
Fnu4HI	GCNGC	7 cut(s)	7, 102, 128, 307, 770, 844, 949
FokI	GGATG	2 cut(s)	104, 888
Fsp4HI	GCNGC	7 cut(s)	7, 102, 128, 307, 770, 844, 949
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	44, 421
GluI	GCNGC	7 cut(s)	7, 102, 128, 307, 770, 844, 949
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	3 cut(s)	275, 759, 866
HgaI	GACGC	2 cut(s)	390, 411
HhaI	GCGC	2 cut(s)	45, 422
Hin1II	CATG	5 cut(s)	18, 66, 151, 446, 678
Hin6I	GCGC	2 cut(s)	43, 420
HinP1I	GCGC	2 cut(s)	43, 420
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	2 cut(s)	455, 522
HinfI	GANTC	5 cut(s)	299, 793, 815, 824, 978
HpaII	CCGG	3 cut(s)	275, 759, 866
Hpy166II	GTNNAC	2 cut(s)	513, 672
Hpy188I	TCNGA	6 cut(s)	325, 453, 777, 801, 838, 983
Hpy188III	TCNNGA	3 cut(s)	426, 764, 790
Hpy8I	GTNNAC	2 cut(s)	513, 672
Hpy99I	CGWCG	2 cut(s)	234, 406
HpyAV	CCTTC	4 cut(s)	596, 652, 763, 865
HpyCH4III	ACNGT	2 cut(s)	245, 805
HpyCH4IV	ACGT	2 cut(s)	408, 627
HpyCH4V	TGCA	8 cut(s)	6, 78, 122, 309, 625, 728, 901, 951
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 133, 849, 954
HpySE526I	ACGT	2 cut(s)	408, 627
Hsp92II	CATG	5 cut(s)	18, 66, 151, 446, 678
HspAI	GCGC	2 cut(s)	43, 420
LmnI	GCTCC	2 cut(s)	365, 857
Lsp1109I	GCAGC	5 cut(s)	18, 113, 293, 855, 935
LweI	GCATC	1 cut(s)	960
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	408, 627
MaeIII	GTNAC	1 cut(s)	218
MboII	GAAGA	3 cut(s)	371, 692, 752
MfeI	CAATTG	1 cut(s)	131
MluCI	AATT	4 cut(s)	131, 601, 685, 718
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	824
MseI	TTAA	3 cut(s)	236, 258, 354
MspI	CCGG	3 cut(s)	275, 759, 866
MspR9I	CCNGG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	131
MvnI	CGCG	3 cut(s)	45, 422, 860
MwoI	GCNNNNNNNGC	4 cut(s)	51, 133, 849, 954
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	14
NlaIII	CATG	5 cut(s)	18, 66, 151, 446, 678
NlaIV	GGNNCC	1 cut(s)	853
NmeAIII	GCCGAG	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	446, 678
PciI	ACATGT	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	2 cut(s)	457, 741
PfeI	GAWTC	4 cut(s)	793, 815, 824, 978
PflFI	GACNNNGTC	2 cut(s)	243, 805
PkrI	GCNGC	7 cut(s)	8, 103, 129, 308, 771, 845, 950
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PscI	ACATGT	1 cut(s)	674
PsiI	TTATAA	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	853
PspPI	GGNCC	1 cut(s)	245
PsrI	GAACNNNNNNTAC	2 cut(s)	329, 361
PstI	CTGCAG	1 cut(s)	311
PsyI	GACNNNGTC	2 cut(s)	243, 805
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
SaqAI	TTAA	3 cut(s)	236, 258, 354
SatI	GCNGC	7 cut(s)	7, 102, 128, 307, 770, 844, 949
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	960
SfcI	CTRYAG	2 cut(s)	307, 973
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	301, 928
SmoI	CTYRAG	2 cut(s)	301, 928
Sse9I	AATT	4 cut(s)	131, 601, 685, 718
SsiI	CCGC	2 cut(s)	128, 770
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	245, 805
TaiI	ACGT	2 cut(s)	411, 630
TaqI	TCGA	4 cut(s)	203, 279, 404, 789
TasI	AATT	4 cut(s)	131, 601, 685, 718
TauI	GCSGC	2 cut(s)	130, 772
TfiI	GAWTC	4 cut(s)	793, 815, 824, 978
Tru1I	TTAA	3 cut(s)	236, 258, 354
Tru9I	TTAA	3 cut(s)	236, 258, 354
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	5 cut(s)	6, 101, 306, 843, 948
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	51, 111, 395
Tth111I	GACNNNGTC	2 cut(s)	243, 805
VpaK11BI	GGWCC	1 cut(s)	245
XceI	RCATGY	2 cut(s)	446, 678
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.