Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

4232640 .. 4233089

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG060400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCTTGCGTTTTCCATGGCCTCATTACTATAGCTCCTTCTGGTTCATCTTACATCTCCCAATTCGATCACGATGGTAGCAATGGAGAACCCAAGTTACTCCCAGCCGACGATGATTGCGGCTATGGAGACAATGAAAAACTCTTCAAGGAACCCTCATTACATGAGCATGAGTTTGATGTTCGTTGCCACACTCTGGATTTGTTCGGAGTTTCTGATCATGGTCACCTGGGGTTTGTGAGAAATTCTTTGGATAGATATATGATATTTGTATTTCTGGTTAAGGGCAATTGTTATGCGGTTATGCCCATTTATTCTCAAGGATGCACTCAATATCCATGTTACAGCAACATTTTAGAATTTTCTTTGCCAAACTTGTTATTGAAATTTAGGTTTAGGGTATCTCATTCTTTCAAATTCTGCAGTATCTGCACCATTCTTTCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.89

Weight (kDa)

5.67

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	2 cut(s)	120, 299
AcsI	RAATTY	4 cut(s)	244, 359, 386, 416
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	148, 385, 415
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	123
AlwNI	CAGNNNCTG	1 cut(s)	429
AoxI	GGCC	1 cut(s)	19
ApoI	RAATTY	4 cut(s)	244, 359, 386, 416
AsuHPI	GGTGA	1 cut(s)	218
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	30, 421
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	16, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	16, 229
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	415
BshFI	GGCC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	67, 217
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	2 cut(s)	120, 299
BspANI	GGCC	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	16, 229
BssMI	GATC	2 cut(s)	67, 217
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	329
BstKTI	GATC	2 cut(s)	70, 220
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	67, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	1 cut(s)	230
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	30, 421
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	329
CaiI	CAGNNNCTG	1 cut(s)	429
CviAII	CATG	5 cut(s)	17, 164, 170, 221, 339
CviJI	RGCY	4 cut(s)	21, 35, 107, 123
CviKI_1	RGCY	4 cut(s)	21, 35, 107, 123
DpnI	GATC	2 cut(s)	69, 219
DpnII	GATC	2 cut(s)	67, 217
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	16
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	5 cut(s)	20, 167, 173, 224, 342
FatI	CATG	5 cut(s)	16, 163, 169, 220, 338
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	121
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	20, 167, 173, 224, 342
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	209, 217, 445
Hpy188III	TCNNGA	2 cut(s)	71, 197
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	327, 423, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
Hsp92II	CATG	5 cut(s)	20, 167, 173, 224, 342
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	67, 217
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	6 cut(s)	27, 117, 182, 215, 242, 263
LweI	GCATC	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	96, 224, 341
MalI	GATC	2 cut(s)	69, 219
MboI	GATC	2 cut(s)	67, 217
MboII	GAAGA	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	289
MluCI	AATT	6 cut(s)	62, 244, 289, 359, 386, 416
MnlI	CCTC	2 cut(s)	32, 166
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	67, 217
NlaIII	CATG	5 cut(s)	20, 167, 173, 224, 342
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	224
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	153
PsrI	GAACNNNNNNTAC	4 cut(s)	81, 113, 144, 176
PstI	CTGCAG	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	429
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	67, 217
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	3 cut(s)	37, 231, 395
SfaNI	GCATC	1 cut(s)	314
SfcI	CTRYAG	2 cut(s)	30, 421
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	6 cut(s)	62, 244, 289, 359, 386, 416
SsiI	CCGC	2 cut(s)	120, 299
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	16
TaqI	TCGA	1 cut(s)	66
TasI	AATT	6 cut(s)	62, 244, 289, 359, 386, 416
TauI	GCSGC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	36, 150
Van91I	CCANNNNNTGG	1 cut(s)	196
XapI	RAATTY	4 cut(s)	244, 359, 386, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.