Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

4198181 .. 4199592

Gene Structure 1412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTGCACTCCATGGACTATAACAAAGCTAGTGAAGAAGGACTGTGCTTCATGCTTCTTGGCTTGCAGGTTTCCCCTAGATGATGAAGCAGTTGATGATCGTAGACGTTATGCTACAACAACTCCTCAGTTGCCAATGAGAAACATGATGGCTTTCGATTATCAGCGCAACTTCGGAGAGAATGAGAGAGTTAGGAACAAGAACATGTCCCCCTCACGCCACAAGAATTCGAACCTATCAGCTCGAAGACGACTGAGACATGATCCCAAACAGGTTAAAGAGATTACTAGTACTAGTAGAATTAGTAGTACTACTTCCAGGCCAGTTCGATATCAGAGCAGTGATGAAGAATCAACCTGCAGACAACTGCCACATTTCGCAGACGAAGATCAAGACTACATAGTATTCTGCTTCAAAGAAGATGGAGCATTCGAAGTAGAGAAAAATGTCAAACCAGAAGGACAGAATTGCAGGGACAGCACCTCATCAAAAAACTCGAGGCAGGTCAATCGGAAGCTTAATTATGACCAAAATACCAAAACAGTTGGAAAGTGTAGCAATGAGGAGAGGTTGACTGAAAAATCATGTGAAATCAATATTTACCCCACAAATGATGGCAATTTTATCATCTTTGACCAAAAGAATGAAGGTAGAGACGGAAAGAACATATGCTCGGATACAAAAGCAACTACTGCTGCTGGTAGCATGGGTGAGGTCTCTATTGAATCAAGTGACTCCAATCAATCGGACCACAGCACAGGCTCTTTCGCATTCCCTGTGTTGGCTGTGGAATGGCCGGGGAGTCCTGTGCGATTGCCAAAACCAGAAGAGCTGGACTTGAGAGAGCACAAGGCTCGGTGTATAGGCCTTCAGTTCCAGTGTTGTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.97

Weight (kDa)

8.18

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	57, 365, 493
AccI	GTMKAC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	794
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	2 cut(s)	292, 310
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	415, 725
AhlI	ACTAGT	2 cut(s)	287, 293
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	28, 242, 517, 832
AluI	AGCT	4 cut(s)	28, 242, 517, 832
Alw21I	GWGCWC	2 cut(s)	8, 849
Alw26I	GTCTC	3 cut(s)	250, 648, 721
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	3 cut(s)	320, 794, 865
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	748
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	2 cut(s)	230, 432
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	748
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	2 cut(s)	8, 849
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	3 cut(s)	142, 416, 608
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 836, 870
BciT130I	CCWGG	1 cut(s)	319
BciVI	GTATCC	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	798
BcoDI	GTCTC	3 cut(s)	250, 648, 721
BcuI	ACTAGT	2 cut(s)	287, 293
BfaI	CTAG	4 cut(s)	29, 77, 288, 294
BfmI	CTRYAG	1 cut(s)	358
BfuAI	ACCTGC	3 cut(s)	57, 365, 493
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
BmcAI	AGTACT	2 cut(s)	292, 310
Bme1390I	CCNGG	2 cut(s)	319, 798
Bme18I	GGWCC	1 cut(s)	748
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	748
BmrFI	CCNGG	2 cut(s)	319, 798
BpiI	GAAGAC	1 cut(s)	253
Bpu14I	TTCGAA	2 cut(s)	230, 432
BpuEI	CTTGAG	1 cut(s)	859
BpuMI	CCSGG	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	11, 797
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse1I	ACTGG	2 cut(s)	323, 877
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	11, 797
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	140, 245
BseNI	ACTGG	2 cut(s)	323, 877
BseRI	GAGGAG	2 cut(s)	114, 578
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	682
BshFI	GGCC	3 cut(s)	322, 796, 867
BsiHKAI	GWGCWC	2 cut(s)	8, 849
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	797
BslFI	GGGAC	2 cut(s)	193, 488
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmAI	GTCTC	3 cut(s)	250, 648, 721
BsmBI	CGTCTC	1 cut(s)	648
BsmFI	GGGAC	2 cut(s)	193, 488
BsmI	GAATGC	2 cut(s)	428, 770
BsnI	GGCC	3 cut(s)	322, 796, 867
Bso31I	GGTCTC	1 cut(s)	721
BsoBI	CYCGRG	1 cut(s)	496
Bsp119I	TTCGAA	2 cut(s)	230, 432
Bsp1286I	GDGCHC	2 cut(s)	8, 849
Bsp143I	GATC	3 cut(s)	97, 262, 388
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	3 cut(s)	322, 796, 867
BspCNI	CTCAG	2 cut(s)	139, 246
BspMAI	CTGCAG	1 cut(s)	362
BspMI	ACCTGC	3 cut(s)	57, 365, 493
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	822
BspT104I	TTCGAA	2 cut(s)	230, 432
BspTNI	GGTCTC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	2 cut(s)	323, 877
BssECI	CCNNGG	2 cut(s)	11, 797
BssMI	GATC	3 cut(s)	97, 262, 388
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	44, 544
Bst6I	CTCTTC	1 cut(s)	822
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstBI	TTCGAA	2 cut(s)	230, 432
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	126, 254
BstDSI	CCRYGG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	100, 265, 391
BstMAI	GTCTC	3 cut(s)	250, 648, 721
BstMBI	GATC	3 cut(s)	97, 262, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 692
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	317, 796
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	322, 796, 867
BtgI	CCRYGG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	346, 884
BveI	ACCTGC	3 cut(s)	57, 365, 493
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	748
Csp6I	GTAC	2 cut(s)	291, 309
CviAII	CATG	7 cut(s)	12, 51, 145, 205, 260, 585, 706
CviQI	GTAC	2 cut(s)	291, 309
DdeI	CTNAG	2 cut(s)	126, 254
DpnI	GATC	3 cut(s)	99, 264, 390
DpnII	GATC	3 cut(s)	97, 262, 388
EaeI	YGGCCR	1 cut(s)	794
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	867
Eco31I	GGTCTC	1 cut(s)	721
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	496
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	7 cut(s)	15, 54, 148, 208, 263, 588, 709
FaqI	GGGAC	2 cut(s)	193, 488
FatI	CATG	7 cut(s)	11, 50, 144, 204, 259, 584, 705
FauNDI	CATATG	1 cut(s)	668
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	696
Fsp4HI	GCNGC	1 cut(s)	696
FspBI	CTAG	4 cut(s)	29, 77, 288, 294
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	696
HaeIII	GGCC	3 cut(s)	322, 796, 867
HapII	CCGG	1 cut(s)	797
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	7 cut(s)	15, 54, 148, 208, 263, 588, 709
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	5 cut(s)	350, 725, 734, 802, 888
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	6, 104, 573
Hpy188I	TCNGA	6 cut(s)	176, 336, 513, 676, 748, 893
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	3 cut(s)	6, 104, 573
HpyAV	CCTTC	4 cut(s)	31, 452, 641, 878
HpyCH4III	ACNGT	2 cut(s)	44, 544
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	6, 66, 360, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 692
HpyF3I	CTNAG	2 cut(s)	126, 254
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	7 cut(s)	15, 54, 148, 208, 263, 588, 709
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	97, 262, 388
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	1 cut(s)	682
MaeI	CTAG	4 cut(s)	29, 77, 288, 294
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	3 cut(s)	99, 264, 390
MboI	GATC	3 cut(s)	97, 262, 388
MboII	GAAGA	6 cut(s)	46, 258, 359, 398, 431, 839
MhlI	GDGCHC	2 cut(s)	8, 849
MluCI	AATT	5 cut(s)	226, 300, 466, 520, 619
MlyI	GAGTC	2 cut(s)	728, 811
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	7 cut(s)	135, 223, 492, 493, 556, 561, 706
MseI	TTAA	2 cut(s)	276, 519
MspI	CCGG	1 cut(s)	797
MspR9I	CCNGG	2 cut(s)	319, 798
Mva1269I	GAATGC	2 cut(s)	428, 770
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	477, 692
NciI	CCSGG	1 cut(s)	798
NcoI	CCATGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	668
NdeII	GATC	3 cut(s)	97, 262, 388
NlaIII	CATG	7 cut(s)	15, 54, 148, 208, 263, 588, 709
NmuCI	GTSAC	1 cut(s)	731
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	2 cut(s)	230, 432
PaeR7I	CTCGAG	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	867
PciI	ACATGT	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	822
PctI	GAATGC	2 cut(s)	428, 770
PfeI	GAWTC	3 cut(s)	350, 725, 888
PkrI	GCNGC	1 cut(s)	697
PleI	GAGTC	2 cut(s)	728, 810
PpsI	GAGTC	2 cut(s)	728, 810
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	748
PspXI	VCTCGAGB	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	2 cut(s)	292, 310
RsaNI	GTAC	2 cut(s)	291, 309
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	276, 519
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	3 cut(s)	97, 262, 388
Sau96I	GGNCC	1 cut(s)	748
ScaI	AGTACT	2 cut(s)	292, 310
SchI	GAGTC	2 cut(s)	728, 811
ScrFI	CCNGG	2 cut(s)	319, 798
SduI	GDGCHC	2 cut(s)	8, 849
SfcI	CTRYAG	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	496
SfuI	TTCGAA	2 cut(s)	230, 432
SinI	GGWCC	1 cut(s)	748
SlaI	CTCGAG	1 cut(s)	496
SmlI	CTYRAG	2 cut(s)	496, 838
SmoI	CTYRAG	2 cut(s)	496, 838
SpeI	ACTAGT	2 cut(s)	287, 293
Sse9I	AATT	5 cut(s)	226, 300, 466, 520, 619
SseBI	AGGCCT	1 cut(s)	867
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	4 cut(s)	29, 77, 288, 294
StuI	AGGCCT	1 cut(s)	867
StyD4I	CCNGG	2 cut(s)	317, 796
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	44, 544
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	6 cut(s)	156, 230, 244, 328, 432, 497
TasI	AATT	5 cut(s)	226, 300, 466, 520, 619
TatI	WGTACW	2 cut(s)	290, 308
TfiI	GAWTC	3 cut(s)	350, 725, 888
Tru1I	TTAA	2 cut(s)	276, 519
Tru9I	TTAA	2 cut(s)	276, 519
TscAI	CASTG	2 cut(s)	346, 884
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	4 cut(s)	39, 99, 360, 660
TspGWI	ACGGA	1 cut(s)	672
TspRI	CASTG	2 cut(s)	346, 884
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	748
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	4 cut(s)	29, 77, 288, 294
ZrmI	AGTACT	2 cut(s)	292, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.