RLG00000005029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013369
Physical Location & Seq
Reverse (-)
64444443 .. 64444991
549 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005029

Sequence Viewer

Length: 312 bp
ATGCCTTGCGTTTTCCATGGCCTCATTACTATAGCTCCTTCTGGTTCGTCTTACATCTCCCAATTCGATCGCGATCGTAGCAATGGAGAACCCAAGTTACTCCCAGCTGACGATGATTGCAGCTATGGAGACAATGAAAAACTCTTCAAGGAACCCTCATTACATGAGCATGAGTTTGATGTTCGTTGCCACACTCTGGATTTGATCCTCCTGGATTTGTCCGGAGTTTCTGTTCATGGTCACCTGGGGTTTGTCACCGAGACCTTTGGCAATTCGGAATATGGATCGGTACAGCAGCATGATAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.51

Weight (kDa)

4.84

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013369)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60880 AT5G60880
fragaria_vesca FvH4_5g13402
malus_domestica MD14G1216500.v1.1
prunus_persica Prupe.5G209900_v2.0.a1
pyrus_communis pycom06g18340 pycom14g17930
rosa_laevigata RLG00000005029 RLG00000005030
rosa_multiflora Rmu_sc0003610.1_g000028
rosa_roxburghii Rroxscaffold_3G00270300
rosa_rugosa Rorug06G0459600
rosa_samantha Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana Rw7G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 196
AccII CGCG 1 cut(s) 72
AccIII TCCGGA 1 cut(s) 221
AclWI GGATC 2 cut(s) 199, 292
AfaI GTAC 2 cut(s) 291, 308
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 2 cut(s) 210, 243
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
AluBI AGCT 3 cut(s) 35, 107, 123
AluI AGCT 3 cut(s) 35, 107, 123
Alw26I GTCTC 2 cut(s) 123, 254
AlwI GGATC 2 cut(s) 199, 292
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 120, 295
AsuHPI GGTGA 2 cut(s) 233, 247
BbvI GCAGC 2 cut(s) 132, 307
BciT130I CCWGG 2 cut(s) 212, 245
BcoDI GTCTC 2 cut(s) 123, 254
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 121, 296
BlsI GCNGC 2 cut(s) 122, 297
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 212, 245
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 2 cut(s) 212, 245
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 16, 244
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 221
BseBI CCWGG 2 cut(s) 212, 245
BseDI CCNNGG 2 cut(s) 16, 244
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 88
BseXI GCAGC 2 cut(s) 132, 307
BseYI CCCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 2 cut(s) 70, 76
BshFI GGCC 1 cut(s) 21
BsiEI CGRYCG 2 cut(s) 70, 76
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 123, 254
BsnI GGCC 1 cut(s) 21
Bso31I GGTCTC 1 cut(s) 254
Bsp13I TCCGGA 1 cut(s) 221
Bsp143I GATC 4 cut(s) 67, 73, 204, 284
Bsp19I CCATGG 1 cut(s) 16
Bsp68I TCGCGA 1 cut(s) 72
BspANI GGCC 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 221
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 199, 292
BspTNI GGTCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 16, 244
BssMI GATC 4 cut(s) 67, 73, 204, 284
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 212, 245
Bst6I CTCTTC 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 16
BstEII GGTNACC 1 cut(s) 239
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 4 cut(s) 70, 76, 207, 287
BstMAI GTCTC 2 cut(s) 123, 254
BstMBI GATC 4 cut(s) 67, 73, 204, 284
BstMCI CGRYCG 2 cut(s) 70, 76
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 2 cut(s) 212, 245
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 210, 243
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 132, 307
BsuRI GGCC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 16
BtuMI TCGCGA 1 cut(s) 72
Csp6I GTAC 2 cut(s) 290, 307
CviAII CATG 5 cut(s) 17, 164, 170, 236, 299
CviJI RGCY 4 cut(s) 21, 35, 107, 123
CviKI_1 RGCY 4 cut(s) 21, 35, 107, 123
CviQI GTAC 2 cut(s) 290, 307
DpnI GATC 4 cut(s) 69, 75, 206, 286
DpnII GATC 4 cut(s) 67, 73, 204, 284
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 210, 243
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 5 cut(s) 20, 167, 173, 239, 302
FaiI YATR 8 cut(s) 18, 32, 126, 165, 171, 237, 282, 300
FatI CATG 5 cut(s) 16, 163, 169, 235, 298
Fnu4HI GCNGC 2 cut(s) 121, 296
Fsp4HI GCNGC 2 cut(s) 121, 296
GluI GCNGC 2 cut(s) 121, 296
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 222
Hin1II CATG 5 cut(s) 20, 167, 173, 239, 302
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 233, 247
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 3 cut(s) 71, 197, 222
HpyAV CCTTC 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
Hsp92II CATG 5 cut(s) 20, 167, 173, 239, 302
Kpn2I TCCGGA 1 cut(s) 221
Kzo9I GATC 4 cut(s) 67, 73, 204, 284
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 8 cut(s) 27, 117, 182, 197, 224, 230, 235, 257
Lsp1109I GCAGC 2 cut(s) 132, 307
MaeIII GTNAC 3 cut(s) 96, 239, 253
MalI GATC 4 cut(s) 69, 75, 206, 286
MboI GATC 4 cut(s) 67, 73, 204, 284
MboII GAAGA 1 cut(s) 136
MluCI AATT 2 cut(s) 62, 271
MnlI CCTC 3 cut(s) 32, 166, 218
MroI TCCGGA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 212, 245
MvaI CCWGG 2 cut(s) 212, 245
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 78
NcoI CCATGG 1 cut(s) 16
NdeII GATC 4 cut(s) 67, 73, 204, 284
NlaIII CATG 5 cut(s) 20, 167, 173, 239, 302
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 239, 253
NruI TCGCGA 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 2 cut(s) 122, 297
Ple19I CGATCG 2 cut(s) 70, 76
Psp6I CCWGG 2 cut(s) 210, 243
PspEI GGTNACC 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 2 cut(s) 210, 243
PspN4I GGNNCC 1 cut(s) 153
PsrI GAACNNNNNNTAC 4 cut(s) 81, 113, 144, 176
PvuI CGATCG 2 cut(s) 70, 76
PvuII CAGCTG 1 cut(s) 107
RruI TCGCGA 1 cut(s) 72
RsaI GTAC 2 cut(s) 291, 308
RsaNI GTAC 2 cut(s) 290, 307
RseI CAYNNNNRTG 1 cut(s) 168
SatI GCNGC 2 cut(s) 121, 296
Sau3AI GATC 4 cut(s) 67, 73, 204, 284
ScaI AGTACT 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 212, 245
SetI ASST 5 cut(s) 37, 109, 125, 246, 266
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 2 cut(s) 62, 271
StyD4I CCNGG 2 cut(s) 210, 243
StyI CCWWGG 1 cut(s) 16
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 62, 271
TatI WGTACW 1 cut(s) 306
TseFI GTSAC 2 cut(s) 239, 253
TseI GCWGC 2 cut(s) 120, 295
Tsp45I GTSAC 2 cut(s) 239, 253
TspDTI ATGAA 2 cut(s) 150, 224
Van91I CCANNNNNTGG 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.