Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Reverse (-)

7570338 .. 7571684

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13402.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTGCACTCCATGGACAATAACAAAGCTAGTGAAGAAGGACTGCGCTTCATGCTTCTTGGCTTGCAGGTTTCCTCTAGATGATGAAGCAGTTGATGACCCTAGACGTTATGCTACAACACCACCTCAGTTGCCAATAAGAAACATGGCTTTCGATTATCAGCGCGATTCTGGAAGGAATGAGAGTGTAAGGAACACGAACATGTCCCCCTCACGCCATAAAAATTCAACCCTATCAGTTCGAAGGCGACCGAGTCATGATTCAAAACAGGTTAAGGAGACTACTAGTACTAGCACTAGCACTAGTATTGGTAGTAGTACTTGCAGGCGAGTTGGATACCAGAGCAGTGATGAAGAATCAAGCTGCAGGCAGCTGCCACATTTTGCAGACGAAGATCAAGACTACATAGTATTCTGCTTCAAAGAAGATGGAAAATTCGAAGTTGTGAAAAATGTCAAACCAGAAGGACAGAAATGCAGGGACAGCACCTCATCAAAAAACTCGAGGCAGATCAATCGAAAGAATGAAGGTGAGAAAGGAAAGAATATATGTTCGGATACAAAAGCAACTGCTGCTTGTAGCATGGGTGAGGTCTCTATTGAATCAAGTGACTCAAATCAATCAGCTGGCAGCACAGCCTCTTTCGCATTCCCTGTGTTGGCTGTGGACTGGTCGGGGAGTCCTGTGCACATGCCTAAACCAGAAGGGCTGGACTTGAGAAAGCACAAGGCTCGGTGTGTAGGCCTTCAGTTTCAGTGTTTTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.62

Weight (kDa)

8.8

Isoelectric Point (pI)

62.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccII	CGCG	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	223, 434
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	2 cut(s)	289, 319
AfiI	CCNNNNNNNGG	1 cut(s)	658
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	4 cut(s)	228, 264, 421, 602
AhlI	ACTAGT	2 cut(s)	284, 302
AluBI	AGCT	4 cut(s)	28, 363, 373, 626
AluI	AGCT	4 cut(s)	28, 363, 373, 626
Alw21I	GWGCWC	2 cut(s)	8, 690
Alw26I	GTCTC	2 cut(s)	272, 598
Alw44I	GTGCAC	2 cut(s)	4, 686
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	1 cut(s)	742
ApaLI	GTGCAC	2 cut(s)	4, 686
ApeKI	GCWGC	5 cut(s)	363, 370, 373, 572, 630
ApoI	RAATTY	2 cut(s)	223, 434
AspLEI	GCGC	2 cut(s)	47, 165
AsuHPI	GGTGA	2 cut(s)	542, 599
AsuII	TTCGAA	2 cut(s)	241, 438
AvaI	CYCGRG	1 cut(s)	502
BaeGI	GKGCMC	2 cut(s)	8, 690
Bbv12I	GWGCWC	2 cut(s)	8, 690
BbvI	GCAGC	5 cut(s)	350, 360, 382, 559, 642
BccI	CCATC	1 cut(s)	422
BcgI	CGANNNNNNTGC	4 cut(s)	497, 531, 713, 747
BciVI	GTATCC	2 cut(s)	329, 550
BcoDI	GTCTC	2 cut(s)	272, 598
BcuI	ACTAGT	2 cut(s)	284, 302
BfaI	CTAG	7 cut(s)	29, 77, 102, 285, 291, 297, 303
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	57
BfuI	GTATCC	2 cut(s)	329, 550
BisI	GCNGC	5 cut(s)	364, 371, 374, 573, 631
BlsI	GCNGC	5 cut(s)	365, 372, 375, 574, 632
BmcAI	AGTACT	2 cut(s)	289, 319
BmeT110I	CYCGRG	1 cut(s)	502
Bpu14I	TTCGAA	2 cut(s)	241, 438
BpuEI	CTTGAG	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	674
BseDI	CCNNGG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	674
BseSI	GKGCMC	2 cut(s)	8, 690
BseXI	GCAGC	5 cut(s)	350, 360, 382, 559, 642
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	744
BsiEI	CGRYCG	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	8, 690
BsiHKCI	CYCGRG	1 cut(s)	502
BslFI	GGGAC	2 cut(s)	190, 494
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmAI	GTCTC	2 cut(s)	272, 598
BsmFI	GGGAC	2 cut(s)	190, 494
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	744
Bso31I	GGTCTC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	502
Bsp119I	TTCGAA	2 cut(s)	241, 438
Bsp1286I	GDGCHC	2 cut(s)	8, 690
Bsp143I	GATC	2 cut(s)	394, 510
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	1 cut(s)	744
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	57
BspT104I	TTCGAA	2 cut(s)	241, 438
BspTNI	GGTCTC	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	394, 510
BssT1I	CCWWGG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBI	TTCGAA	2 cut(s)	241, 438
BstC8I	GCNNGC	4 cut(s)	64, 326, 368, 628
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	47, 165
BstKTI	GATC	2 cut(s)	397, 513
BstMAI	GTCTC	2 cut(s)	272, 598
BstMBI	GATC	2 cut(s)	394, 510
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 483, 572, 644
BstNSI	RCATGY	2 cut(s)	205, 694
BstSFI	CTRYAG	1 cut(s)	364
BstSLI	GKGCMC	2 cut(s)	8, 690
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	5 cut(s)	350, 360, 382, 559, 642
BsuI	GTATCC	2 cut(s)	329, 550
BsuRI	GGCC	1 cut(s)	744
BtgI	CCRYGG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	352, 761
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	4 cut(s)	64, 326, 368, 628
CciI	TCATGA	1 cut(s)	256
CfoI	GCGC	2 cut(s)	47, 165
Csp6I	GTAC	2 cut(s)	288, 318
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	7 cut(s)	12, 51, 145, 202, 257, 583, 691
CviQI	GTAC	2 cut(s)	288, 318
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	396, 512
DpnII	GATC	2 cut(s)	394, 510
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	744
Eco31I	GGTCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	731
Eco88I	CYCGRG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	7 cut(s)	15, 54, 148, 205, 260, 586, 694
FaqI	GGGAC	2 cut(s)	190, 494
FatI	CATG	7 cut(s)	11, 50, 144, 201, 256, 582, 690
Fnu4HI	GCNGC	5 cut(s)	364, 371, 374, 573, 631
Fsp4HI	GCNGC	5 cut(s)	364, 371, 374, 573, 631
FspBI	CTAG	7 cut(s)	29, 77, 102, 285, 291, 297, 303
GlaI	GCGC	2 cut(s)	46, 164
GluI	GCNGC	5 cut(s)	364, 371, 374, 573, 631
HaeIII	GGCC	1 cut(s)	744
HhaI	GCGC	2 cut(s)	47, 165
Hin1II	CATG	7 cut(s)	15, 54, 148, 205, 260, 586, 694
Hin6I	GCGC	2 cut(s)	45, 163
HinP1I	GCGC	2 cut(s)	45, 163
HinfI	GANTC	8 cut(s)	167, 253, 260, 356, 602, 611, 679, 765
HphI	GGTGA	2 cut(s)	542, 599
Hpy166II	GTNNAC	3 cut(s)	6, 667, 688
Hpy188I	TCNGA	2 cut(s)	556, 770
Hpy188III	TCNNGA	4 cut(s)	77, 171, 257, 398
Hpy8I	GTNNAC	3 cut(s)	6, 667, 688
HpyAV	CCTTC	7 cut(s)	31, 168, 237, 458, 521, 698, 755
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	7 cut(s)	6, 66, 324, 366, 386, 477, 688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 483, 572, 644
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	7 cut(s)	15, 54, 148, 205, 260, 586, 694
HspAI	GCGC	2 cut(s)	45, 163
Kzo9I	GATC	2 cut(s)	394, 510
Lsp1109I	GCAGC	5 cut(s)	350, 360, 382, 559, 642
MaeI	CTAG	7 cut(s)	29, 77, 102, 285, 291, 297, 303
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	2 cut(s)	396, 512
MboI	GATC	2 cut(s)	394, 510
MboII	GAAGA	4 cut(s)	46, 365, 404, 437
MhlI	GDGCHC	2 cut(s)	8, 690
MluCI	AATT	2 cut(s)	223, 434
MlyI	GAGTC	3 cut(s)	262, 605, 688
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	7 cut(s)	84, 135, 220, 498, 499, 583, 649
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	373, 626
Mva1269I	GAATGC	1 cut(s)	647
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	51, 483, 572, 644
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	394, 510
NlaIII	CATG	7 cut(s)	15, 54, 148, 205, 260, 586, 694
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	2 cut(s)	205, 694
NspV	TTCGAA	2 cut(s)	241, 438
PaeR7I	CTCGAG	1 cut(s)	502
PagI	TCATGA	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	744
PciI	ACATGT	1 cut(s)	201
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	5 cut(s)	167, 260, 356, 602, 765
PflFI	GACNNNGTC	1 cut(s)	252
PkrI	GCNGC	5 cut(s)	365, 372, 375, 574, 632
PleI	GAGTC	3 cut(s)	261, 605, 687
PpsI	GAGTC	3 cut(s)	261, 605, 687
PscI	ACATGT	1 cut(s)	201
PspXI	VCTCGAGB	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	368
PsyI	GACNNNGTC	1 cut(s)	252
PvuII	CAGCTG	2 cut(s)	373, 626
RsaI	GTAC	2 cut(s)	289, 319
RsaNI	GTAC	2 cut(s)	288, 318
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	5 cut(s)	364, 371, 374, 573, 631
Sau3AI	GATC	2 cut(s)	394, 510
ScaI	AGTACT	2 cut(s)	289, 319
SchI	GAGTC	3 cut(s)	262, 605, 688
SduI	GDGCHC	2 cut(s)	8, 690
SfcI	CTRYAG	1 cut(s)	364
Sfr274I	CTCGAG	1 cut(s)	502
SfuI	TTCGAA	2 cut(s)	241, 438
SlaI	CTCGAG	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	502, 715
SmoI	CTYRAG	2 cut(s)	502, 715
SpeI	ACTAGT	2 cut(s)	284, 302
Sse9I	AATT	2 cut(s)	223, 434
SseBI	AGGCCT	1 cut(s)	744
SspMI	CTAG	7 cut(s)	29, 77, 102, 285, 291, 297, 303
StuI	AGGCCT	1 cut(s)	744
StyI	CCWWGG	1 cut(s)	11
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	5 cut(s)	153, 241, 438, 503, 517
TaqII	GACCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	223, 434
TatI	WGTACW	2 cut(s)	287, 317
TfiI	GAWTC	5 cut(s)	167, 260, 356, 602, 765
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	352, 761
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	5 cut(s)	363, 370, 373, 572, 630
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	39, 99, 366, 540
TspRI	CASTG	2 cut(s)	352, 761
Tth111I	GACNNNGTC	1 cut(s)	252
VneI	GTGCAC	2 cut(s)	4, 686
XapI	RAATTY	2 cut(s)	223, 434
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	2 cut(s)	205, 694
XhoI	CTCGAG	1 cut(s)	502
XspI	CTAG	7 cut(s)	29, 77, 102, 285, 291, 297, 303
ZrmI	AGTACT	2 cut(s)	289, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.