Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003610.1

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

116165 .. 118253

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003610.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atgtgcactccatggactataacaaagctagtgaagaaggactgtgcttcatgcttcttggcttgcaggtttcctctagatgatgaagcagttgatgatcgtagacgttatgctacaacaactcctcagttgccaatgagaaacatgatggctttcgattatcagcgcaacttcggagagaatgagagagttaggaacaagaacatgtccccctcacgccacaagaattcgaacctatcagctcgaagacgactgagacatgatcccaaacaggttaaagagattactagtactagtagaattagtagtactacttccaggccagttcgatatcagagcagtgatgaagaatcaacctgcagacaactgccacatttcgcagacgaagatcaagactacatagtattctgcttcaaagaagatggagcattcgaagtagagaaaaatgtcaaaccagaaggacagaattgcagggacagcacctcatcaaaaaactcgaggcaggtcaatcggaagaatgaaggtagagacggaaagaacatatgctcggatacaaaagcaactactgctgctggtagcatgggtgaggtctctattgaatcaagtgactccaatcaatcggaccacagcacaggctctttcgcattccctgtgttggctgtggaatggccggggagtcctgtgcgattgccaaaaccagaagagctggacttgagagagcacaaggctcggtgtataggccttcacttaaaattgactagtgcttcgtttggatttaagctgtacttaaaaccctattatgatgacactggtcgtcttgcgatgccttgcgttttccatggcctcattactatagctccttctggttcatcttacatctcccaattcgatcacgatggtagcaatggagaacccaagttactcccagccgacgatgattgcggctatggagacaatgaaaaactcttcaaggaaccctcattacatgagcatgagtttgatgttcgttgccacactctggatttgttcggagtttctgatcatggtcacctggggtttgtgagaaattctttggatagatatatgatatttgtatttctggttaagggcaattgttatgcccatttattctcaaggatgcactcaatatccatgttacagcaacattttagaattttctttgccaaacttgttattgaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

45.67

Weight (kDa)

7.23

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	57, 365, 493
AccB7I	CCANNNNNTGG	1 cut(s)	1018
AccI	GTMKAC	1 cut(s)	103
AciI	CCGC	1 cut(s)	942
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	4 cut(s)	226, 1066, 1173, 1200
AfaI	GTAC	3 cut(s)	292, 310, 785
AfiI	CCNNNNNNNGG	2 cut(s)	655, 1018
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	4 cut(s)	415, 599, 970, 1199
AhlI	ACTAGT	3 cut(s)	287, 293, 758
AjnI	CCWGG	2 cut(s)	317, 1050
AluBI	AGCT	5 cut(s)	28, 242, 706, 781, 857
AluI	AGCT	5 cut(s)	28, 242, 706, 781, 857
Alw21I	GWGCWC	2 cut(s)	8, 723
Alw26I	GTCTC	4 cut(s)	250, 522, 595, 945
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	4 cut(s)	320, 668, 739, 841
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	4 cut(s)	226, 1066, 1173, 1200
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	2 cut(s)	596, 1040
AsuII	TTCGAA	2 cut(s)	230, 432
AvaI	CYCGRG	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	2 cut(s)	8, 723
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	3 cut(s)	142, 416, 890
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 710, 744
BciT130I	CCWGG	2 cut(s)	319, 1052
BciVI	GTATCC	1 cut(s)	544
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	4 cut(s)	250, 522, 595, 945
BcuI	ACTAGT	3 cut(s)	287, 293, 758
BfaI	CTAG	5 cut(s)	29, 77, 288, 294, 759
BfmI	CTRYAG	2 cut(s)	358, 852
BfuAI	ACCTGC	3 cut(s)	57, 365, 493
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	2 cut(s)	570, 943
BlsI	GCNGC	2 cut(s)	571, 944
BmcAI	AGTACT	2 cut(s)	292, 310
Bme1390I	CCNGG	3 cut(s)	319, 672, 1052
Bme18I	GGWCC	1 cut(s)	622
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	975
BmrFI	CCNGG	3 cut(s)	319, 672, 1052
BmsI	GCATC	2 cut(s)	813, 1128
BoxI	GACNNNNGTC	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	253
Bpu14I	TTCGAA	2 cut(s)	230, 432
BpuEI	CTTGAG	2 cut(s)	733, 1117
BpuMI	CCSGG	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	4 cut(s)	11, 671, 838, 1051
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 841, 871
Bsc4I	CCNNNNNNNGG	2 cut(s)	655, 1018
Bse1I	ACTGG	2 cut(s)	323, 814
Bse3DI	GCAATG	1 cut(s)	910
BseBI	CCWGG	2 cut(s)	319, 1052
BseDI	CCNNGG	4 cut(s)	11, 671, 838, 1051
BseGI	GGATG	1 cut(s)	1143
BseLI	CCNNNNNNNGG	2 cut(s)	655, 1018
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	2 cut(s)	140, 245
BseNI	ACTGG	2 cut(s)	323, 814
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	556
BseYI	CCCAGC	1 cut(s)	925
BshFI	GGCC	4 cut(s)	322, 670, 741, 843
BsiHKAI	GWGCWC	2 cut(s)	8, 723
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	2 cut(s)	193, 488
BslI	CCNNNNNNNGG	2 cut(s)	655, 1018
BsmAI	GTCTC	4 cut(s)	250, 522, 595, 945
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	193, 488
BsmI	GAATGC	2 cut(s)	428, 644
BsnI	GGCC	4 cut(s)	322, 670, 741, 843
Bso31I	GGTCTC	1 cut(s)	595
BsoBI	CYCGRG	1 cut(s)	496
Bsp119I	TTCGAA	2 cut(s)	230, 432
Bsp1286I	GDGCHC	2 cut(s)	8, 723
Bsp143I	GATC	5 cut(s)	97, 262, 388, 889, 1039
Bsp19I	CCATGG	2 cut(s)	11, 838
BspACI	CCGC	1 cut(s)	942
BspANI	GGCC	4 cut(s)	322, 670, 741, 843
BspCNI	CTCAG	2 cut(s)	139, 246
BspLI	GGNNCC	1 cut(s)	975
BspMAI	CTGCAG	1 cut(s)	362
BspMI	ACCTGC	3 cut(s)	57, 365, 493
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	696
BspT104I	TTCGAA	2 cut(s)	230, 432
BspTNI	GGTCTC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	2 cut(s)	323, 814
BssECI	CCNNGG	4 cut(s)	11, 671, 838, 1051
BssMI	GATC	5 cut(s)	97, 262, 388, 889, 1039
BssT1I	CCWWGG	2 cut(s)	11, 838
Bst2UI	CCWGG	2 cut(s)	319, 1052
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	696, 971
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBI	TTCGAA	2 cut(s)	230, 432
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	126, 254
BstDSI	CCRYGG	2 cut(s)	11, 838
BstEII	GGTNACC	1 cut(s)	1046
BstF5I	GGATG	1 cut(s)	1143
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	5 cut(s)	100, 265, 391, 892, 1042
BstMAI	GTCTC	4 cut(s)	250, 522, 595, 945
BstMBI	GATC	5 cut(s)	97, 262, 388, 889, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 566
BstNI	CCWGG	2 cut(s)	319, 1052
BstNSI	RCATGY	1 cut(s)	208
BstPAI	GACNNNNGTC	1 cut(s)	810
BstPI	GGTNACC	1 cut(s)	1046
BstSCI	CCNGG	3 cut(s)	317, 670, 1050
BstSFI	CTRYAG	2 cut(s)	358, 852
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	322, 670, 741, 843
BtgI	CCRYGG	2 cut(s)	11, 838
BtgZI	GCGATG	1 cut(s)	836
BtsCI	GGATG	1 cut(s)	1143
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	346, 807
BveI	ACCTGC	3 cut(s)	57, 365, 493
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	291, 309, 784
CviQI	GTAC	3 cut(s)	291, 309, 784
DdeI	CTNAG	2 cut(s)	126, 254
DpnI	GATC	5 cut(s)	99, 264, 390, 891, 1041
DpnII	GATC	5 cut(s)	97, 262, 388, 889, 1039
EaeI	YGGCCR	1 cut(s)	668
Eam1104I	CTCTTC	2 cut(s)	696, 971
EarI	CTCTTC	2 cut(s)	696, 971
Eco130I	CCWWGG	2 cut(s)	11, 838
Eco147I	AGGCCT	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	622
Eco88I	CYCGRG	1 cut(s)	496
Eco91I	GGTNACC	1 cut(s)	1046
EcoO65I	GGTNACC	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	317, 1050
EcoRV	GATATC	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	11, 838
ErhI	CCWWGG	2 cut(s)	11, 838
Esp3I	CGTCTC	1 cut(s)	522
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	2 cut(s)	193, 488
FauNDI	CATATG	1 cut(s)	542
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	570, 943
FokI	GGATG	1 cut(s)	1150
Fsp4HI	GCNGC	2 cut(s)	570, 943
FspBI	CTAG	5 cut(s)	29, 77, 288, 294, 759
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	570, 943
GsaI	CCCAGC	1 cut(s)	929
HaeIII	GGCC	4 cut(s)	322, 670, 741, 843
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	350, 599, 608, 676
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	2 cut(s)	596, 1040
Hpy166II	GTNNAC	2 cut(s)	6, 104
Hpy188I	TCNGA	7 cut(s)	176, 336, 513, 550, 622, 1031, 1039
Hpy188III	TCNNGA	4 cut(s)	77, 392, 893, 1019
Hpy8I	GTNNAC	2 cut(s)	6, 104
Hpy99I	CGWCG	1 cut(s)	935
HpyAV	CCTTC	5 cut(s)	31, 452, 515, 752, 870
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	5 cut(s)	6, 66, 360, 471, 1141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 566
HpyF3I	CTNAG	2 cut(s)	126, 254
HpySE526I	ACGT	1 cut(s)	106
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	5 cut(s)	97, 262, 388, 889, 1039
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	2 cut(s)	425, 862
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	2 cut(s)	813, 1128
MaeI	CTAG	5 cut(s)	29, 77, 288, 294, 759
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	4 cut(s)	605, 918, 1046, 1155
MalI	GATC	5 cut(s)	99, 264, 390, 891, 1041
MboI	GATC	5 cut(s)	97, 262, 388, 889, 1039
MboII	GAAGA	8 cut(s)	46, 258, 359, 398, 431, 526, 713, 958
MfeI	CAATTG	1 cut(s)	1111
MhlI	GDGCHC	2 cut(s)	8, 723
MluCI	AATT	9 cut(s)	226, 300, 466, 752, 884, 1066, 1111, 1173, 1200
MlyI	GAGTC	2 cut(s)	602, 685
MnlI	CCTC	8 cut(s)	84, 135, 223, 492, 493, 580, 854, 988
MseI	TTAA	5 cut(s)	276, 749, 777, 788, 1104
MslI	CAYNNNNRTG	1 cut(s)	990
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	3 cut(s)	319, 672, 1052
MunI	CAATTG	1 cut(s)	1111
Mva1269I	GAATGC	2 cut(s)	428, 644
MvaI	CCWGG	2 cut(s)	319, 1052
MwoI	GCNNNNNNNGC	2 cut(s)	477, 566
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	2 cut(s)	11, 838
NdeI	CATATG	1 cut(s)	542
NdeII	GATC	5 cut(s)	97, 262, 388, 889, 1039
NlaIV	GGNNCC	1 cut(s)	975
NmuCI	GTSAC	2 cut(s)	605, 1046
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	2 cut(s)	230, 432
PaeR7I	CTCGAG	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	741
PciI	ACATGT	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	696
PctI	GAATGC	2 cut(s)	428, 644
PfeI	GAWTC	2 cut(s)	350, 599
PflMI	CCANNNNNTGG	1 cut(s)	1018
PkrI	GCNGC	2 cut(s)	571, 944
PleI	GAGTC	2 cut(s)	602, 684
PpsI	GAGTC	2 cut(s)	602, 684
PscI	ACATGT	1 cut(s)	204
PshAI	GACNNNNGTC	1 cut(s)	810
Psp6I	CCWGG	2 cut(s)	317, 1050
PspEI	GGTNACC	1 cut(s)	1046
PspFI	CCCAGC	1 cut(s)	925
PspGI	CCWGG	2 cut(s)	317, 1050
PspN4I	GGNNCC	1 cut(s)	975
PspPI	GGNCC	1 cut(s)	622
PspXI	VCTCGAGB	1 cut(s)	496
PsrI	GAACNNNNNNTAC	4 cut(s)	903, 935, 966, 998
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	292, 310, 785
RsaNI	GTAC	3 cut(s)	291, 309, 784
RseI	CAYNNNNRTG	1 cut(s)	990
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	5 cut(s)	276, 749, 777, 788, 1104
SatI	GCNGC	2 cut(s)	570, 943
Sau3AI	GATC	5 cut(s)	97, 262, 388, 889, 1039
Sau96I	GGNCC	1 cut(s)	622
ScaI	AGTACT	2 cut(s)	292, 310
SchI	GAGTC	2 cut(s)	602, 685
ScrFI	CCNGG	3 cut(s)	319, 672, 1052
SduI	GDGCHC	2 cut(s)	8, 723
SfaNI	GCATC	2 cut(s)	813, 1128
SfcI	CTRYAG	2 cut(s)	358, 852
Sfr274I	CTCGAG	1 cut(s)	496
SfuI	TTCGAA	2 cut(s)	230, 432
SinI	GGWCC	1 cut(s)	622
SlaI	CTCGAG	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	3 cut(s)	496, 712, 1132
SmoI	CTYRAG	3 cut(s)	496, 712, 1132
SpeI	ACTAGT	3 cut(s)	287, 293, 758
Sse9I	AATT	9 cut(s)	226, 300, 466, 752, 884, 1066, 1111, 1173, 1200
SseBI	AGGCCT	1 cut(s)	741
SsiI	CCGC	1 cut(s)	942
SspMI	CTAG	5 cut(s)	29, 77, 288, 294, 759
StuI	AGGCCT	1 cut(s)	741
StyD4I	CCNGG	3 cut(s)	317, 670, 1050
StyI	CCWWGG	2 cut(s)	11, 838
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	7 cut(s)	156, 230, 244, 328, 432, 497, 888
TasI	AATT	9 cut(s)	226, 300, 466, 752, 884, 1066, 1111, 1173, 1200
TatI	WGTACW	3 cut(s)	290, 308, 783
TauI	GCSGC	1 cut(s)	945
TfiI	GAWTC	2 cut(s)	350, 599
Tru1I	TTAA	5 cut(s)	276, 749, 777, 788, 1104
Tru9I	TTAA	5 cut(s)	276, 749, 777, 788, 1104
TscAI	CASTG	2 cut(s)	346, 814
TseFI	GTSAC	2 cut(s)	605, 1046
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	605, 1046
TspDTI	ATGAA	6 cut(s)	39, 99, 360, 534, 858, 972
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	346, 814
Van91I	CCANNNNNTGG	1 cut(s)	1018
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	4 cut(s)	226, 1066, 1173, 1200
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	208
XhoI	CTCGAG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	5 cut(s)	29, 77, 288, 294, 759
ZrmI	AGTACT	2 cut(s)	292, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.