Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

22144927 .. 22146203

Gene Structure 1277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTGCAGCACACCATGGACAATGACAAGGCTAGTGAGATGGTGCGTGAAGGACTGGGCTTCGTGTTTCTTGGCTTGCAGGTTTCTTTTGGATGATGAACCAGCTGATAAATGGTGCCCTGCAACGCCGCAATTGCCAATACGAAACATGGCTTTCGATATGCTGGGCGAAAGCAGAAGCAATGAGACGGGGAAAAAGATGCCGAGGCATAAAAACTGTGACAGAGAGCGACGACTAAGACACAGTACTAAACAACCTAAAGACACAAGCTGCAGGCCACGTTTTTCAGATGAGGAGTATATAGTGTTCTGCTTTAAAGAAGATGGAGCATTTGAAGTTGTGAAAAACAGCAAATTGGAAGCGTTGAACACCATAGATTGCGCGTCAAGAAACTCACCGGGGCCTGCCAATCGGAAGCTTAGCCGTGGGGAGGATACAAGAGCAGTTGAAAGGCGTAGCAATGAGAAGAGGTTGACTGAAATGGCTTATGATATTTACCCTACAAATGATGGAAAATGTATCATCTTTGACCAAAAGCACGAGGAAGAAGAGAAAAACCGCTCGGGTCAAGAACCACCTCCGAGTAGAGATGTCAAGTATCGTTCGACCGTGTCAGTTGAATCAAGCGATTCAAATCAATCGGATGGCAGCACAGGCTCTTTCGCGTTTCCGGTGTTGGGCAGGGAATGGAATGGCAGTCCTGTGCAAATGCCGATATCAGAAGCTATGGACTTAAGAAAGCACAAGGCTCGCTGCATCGGCTTTCAGTTTCAGTGCTGTCGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

30.2

Weight (kDa)

8.53

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	561
AccII	CGCG	2 cut(s)	383, 665
AciI	CCGC	2 cut(s)	128, 559
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	430, 677
AflII	CTTAAG	1 cut(s)	733
AgsI	TTSAA	5 cut(s)	335, 367, 449, 620, 633
AluBI	AGCT	4 cut(s)	104, 270, 418, 725
AluI	AGCT	4 cut(s)	104, 270, 418, 725
Alw26I	GTCTC	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	2 cut(s)	275, 401
ApeKI	GCWGC	4 cut(s)	6, 270, 648, 753
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	114
BauI	CACGAG	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	18, 257, 660, 740
BccI	CCATC	4 cut(s)	33, 317, 503, 638
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	731, 765
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	5 cut(s)	7, 128, 271, 649, 754
BlpI	GCTNAGC	1 cut(s)	419
BlsI	GCNGC	5 cut(s)	8, 129, 272, 650, 755
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	116, 402
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	189, 765
BmuI	ACTGGG	1 cut(s)	64
Bpu1102I	GCTNAGC	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	4 cut(s)	14, 203, 398, 424
BsaWI	WCCGGW	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 677
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	2 cut(s)	187, 466
Bse8I	GATNNNNATC	1 cut(s)	633
BseDI	CCNNGG	4 cut(s)	14, 203, 398, 424
BseGI	GGATG	2 cut(s)	97, 649
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	430, 677
BseMI	GCAATG	2 cut(s)	187, 466
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	18, 257, 660, 740
BseYI	CCCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	383, 665
Bsh1285I	CGRYCG	1 cut(s)	609
BshFI	GGCC	2 cut(s)	277, 403
BshNI	GGYRCC	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	398, 671
BslI	CCNNNNNNNGG	2 cut(s)	430, 677
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	277, 403
BsoBI	CYCGRG	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp1720I	GCTNAGC	1 cut(s)	419
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	2 cut(s)	128, 559
BspANI	GGCC	2 cut(s)	277, 403
BspFNI	CGCG	2 cut(s)	383, 665
BspLI	GGNNCC	2 cut(s)	116, 402
BspMAI	CTGCAG	1 cut(s)	275
BspMI	ACCTGC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	114
BspTI	CTTAAG	1 cut(s)	733
BsrBI	CCGCTC	1 cut(s)	561
BsrDI	GCAATG	2 cut(s)	187, 466
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	4 cut(s)	14, 203, 398, 424
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	539
Bst4CI	ACNGT	3 cut(s)	218, 245, 610
Bst6I	CTCTTC	2 cut(s)	461, 543
BstAFI	CTTAAG	1 cut(s)	733
BstC8I	GCNNGC	4 cut(s)	76, 275, 405, 751
BstDEI	CTNAG	2 cut(s)	236, 419
BstDSI	CCRYGG	2 cut(s)	14, 424
BstF5I	GGATG	2 cut(s)	97, 649
BstFNI	CGCG	2 cut(s)	383, 665
BstHHI	GCGC	1 cut(s)	383
BstMAI	GTCTC	1 cut(s)	179
BstMCI	CGRYCG	1 cut(s)	609
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 654, 759
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	271
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	2 cut(s)	383, 665
BstV1I	GCAGC	4 cut(s)	18, 257, 660, 740
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	277, 403
BtgI	CCRYGG	2 cut(s)	14, 424
BtsCI	GGATG	2 cut(s)	97, 649
BtsIMutI	CAGTG	1 cut(s)	779
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	4 cut(s)	76, 275, 405, 751
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	2 cut(s)	15, 148
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	2 cut(s)	236, 419
DraI	TTTAAA	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	461, 543
EarI	CTCTTC	2 cut(s)	461, 543
Eco130I	CCWWGG	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRV	GATATC	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	18, 151
FaiI	YATR	9 cut(s)	16, 149, 161, 210, 300, 302, 374, 489, 728
FatI	CATG	2 cut(s)	14, 147
Fnu4HI	GCNGC	5 cut(s)	7, 128, 271, 649, 754
FokI	GGATG	2 cut(s)	104, 656
Fsp4HI	GCNGC	5 cut(s)	7, 128, 271, 649, 754
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	5 cut(s)	7, 128, 271, 649, 754
GsaI	CCCAGC	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	277, 403
HapII	CCGG	2 cut(s)	398, 671
HgaI	GACGC	1 cut(s)	372
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	2 cut(s)	18, 151
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	620, 629, 783
HpaII	CCGG	2 cut(s)	398, 671
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	6 cut(s)	289, 414, 582, 643, 721, 788
Hpy188III	TCNNGA	2 cut(s)	387, 569
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	3 cut(s)	218, 245, 610
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	6 cut(s)	6, 78, 122, 273, 706, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 654, 759
HpyF3I	CTNAG	2 cut(s)	236, 419
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	18, 151
HspAI	GCGC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	4 cut(s)	18, 257, 660, 740
LweI	GCATC	2 cut(s)	189, 765
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	218
MbiI	CCGCTC	1 cut(s)	561
MboII	GAAGA	4 cut(s)	332, 478, 557, 560
MfeI	CAATTG	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	2 cut(s)	131, 353
MnlI	CCTC	6 cut(s)	198, 286, 424, 462, 535, 588
MseI	TTAA	2 cut(s)	315, 734
MspA1I	CMGCKG	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	733
MspI	CCGG	2 cut(s)	398, 671
MspR9I	CCNGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	131
MvnI	CGCG	2 cut(s)	383, 665
MwoI	GCNNNNNNNGC	3 cut(s)	133, 654, 759
NciI	CCSGG	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	14
NlaIII	CATG	2 cut(s)	18, 151
NlaIV	GGNNCC	2 cut(s)	116, 402
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	620, 629, 783
PflFI	GACNNNGTC	1 cut(s)	610
PkrI	GCNGC	5 cut(s)	8, 129, 272, 650, 755
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	116, 402
PspPI	GGNCC	1 cut(s)	401
PsrI	GAACNNNNNNTAC	2 cut(s)	290, 322
PstI	CTGCAG	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	610
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	315, 734
SatI	GCNGC	5 cut(s)	7, 128, 271, 649, 754
Sau96I	GGNCC	1 cut(s)	401
ScaI	AGTACT	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	9 cut(s)	83, 106, 259, 272, 283, 420, 473, 580, 727
SfaNI	GCATC	2 cut(s)	189, 765
SfcI	CTRYAG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
Sse9I	AATT	2 cut(s)	131, 353
SsiI	CCGC	2 cut(s)	128, 559
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	3 cut(s)	218, 245, 610
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	3 cut(s)	156, 605, 781
TasI	AATT	2 cut(s)	131, 353
TatI	WGTACW	1 cut(s)	245
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	620, 629, 783
Tru1I	TTAA	2 cut(s)	315, 734
Tru9I	TTAA	2 cut(s)	315, 734
TscAI	CASTG	1 cut(s)	779
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	4 cut(s)	6, 270, 648, 753
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	779
Tth111I	GACNNNGTC	1 cut(s)	610
Vha464I	CTTAAG	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.