Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

4667279 .. 4668689

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG060400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGCACTCCATGGACTATAACAAAGCTAGTGAAGAAGGACTGTGCTTCATGCTTCTTGGCTTGCAGGTTTCCTCTAGATGATGAAGCAGTTGATGATCGTAGACGTTATGCTACAACAACTCCTCAGTTGCCAATGAGAAACATGATGGCTTTCGATTATCAGCGCAACTTCGGAGAGAATGAGAGAGTTAGGAACAAGAACATGTCCCCCTCACGCCACAAGAATTCGAACCTATCAGCTCGAAGACGACTGAGACATGATCCCAAACAGGTTAAAGAGATTACTAGTACTAGTAGAATTAGTAATACTACTTCCAGGCCAGTTCGATATCAGAGCAGTGATGAAGAATCAACCTGCAGACAACTGCCACATTTCGCAGACGAAGATCAAGACTACATAGTATTCTGCTTCAAAGAAGATGGAGCATTCGAAGTAGAGAAAAATGTCAAACCAGAAGGACAGAATTGCAGGGACAGCACCTCATCAAAAAACTCAAGGCAGGTCAATCGGAAGAATGAAGGTAGAGACGGAAAGAACATATGCTCGGATACAAAAGCAACTACTGCTGCTGGTAGCATGGGTGAGGTCTCTATTGAATCAAGTGACTCCAATCAATCGGACCACAGCACAGGCTCTTTCGCATTCCCTGTGTTGGCTGTGGAATGGCCGGGGAGTCCTGTGCGATTGCCAAAACCAGAAGAGCTGGACTTGAGAGAGCACAAGGCTCGGTGTATAGGCCTTCAGTTCCAGTGTTGTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

29.13

Weight (kDa)

8.62

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	57, 365, 493
AccI	GTMKAC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	728
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	655
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	415, 599
AhlI	ACTAGT	2 cut(s)	287, 293
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	3 cut(s)	28, 242, 706
AluI	AGCT	3 cut(s)	28, 242, 706
Alw21I	GWGCWC	2 cut(s)	8, 723
Alw26I	GTCTC	3 cut(s)	250, 522, 595
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	3 cut(s)	320, 668, 739
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	2 cut(s)	230, 432
AvaII	GGWCC	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	2 cut(s)	8, 723
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	2 cut(s)	142, 416
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 710, 744
BciT130I	CCWGG	1 cut(s)	319
BciVI	GTATCC	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	3 cut(s)	250, 522, 595
BcuI	ACTAGT	2 cut(s)	287, 293
BfaI	CTAG	4 cut(s)	29, 77, 288, 294
BfmI	CTRYAG	1 cut(s)	358
BfuAI	ACCTGC	3 cut(s)	57, 365, 493
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	319, 672
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	622
BmrFI	CCNGG	2 cut(s)	319, 672
BpiI	GAAGAC	1 cut(s)	253
Bpu14I	TTCGAA	2 cut(s)	230, 432
BpuEI	CTTGAG	2 cut(s)	481, 733
BpuMI	CCSGG	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	11, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	323, 751
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	11, 671
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	2 cut(s)	140, 245
BseNI	ACTGG	2 cut(s)	323, 751
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	556
BshFI	GGCC	3 cut(s)	322, 670, 741
BsiHKAI	GWGCWC	2 cut(s)	8, 723
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	2 cut(s)	193, 488
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	3 cut(s)	250, 522, 595
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	193, 488
BsmI	GAATGC	2 cut(s)	428, 644
BsnI	GGCC	3 cut(s)	322, 670, 741
Bso31I	GGTCTC	1 cut(s)	595
Bsp119I	TTCGAA	2 cut(s)	230, 432
Bsp1286I	GDGCHC	2 cut(s)	8, 723
Bsp143I	GATC	3 cut(s)	97, 262, 388
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	3 cut(s)	322, 670, 741
BspCNI	CTCAG	2 cut(s)	139, 246
BspMAI	CTGCAG	1 cut(s)	362
BspMI	ACCTGC	3 cut(s)	57, 365, 493
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	696
BspT104I	TTCGAA	2 cut(s)	230, 432
BspTNI	GGTCTC	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	323, 751
BssECI	CCNNGG	2 cut(s)	11, 671
BssMI	GATC	3 cut(s)	97, 262, 388
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	696
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBI	TTCGAA	2 cut(s)	230, 432
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	126, 254
BstDSI	CCRYGG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	100, 265, 391
BstMAI	GTCTC	3 cut(s)	250, 522, 595
BstMBI	GATC	3 cut(s)	97, 262, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 566
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	317, 670
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	322, 670, 741
BtgI	CCRYGG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	346, 758
BveI	ACCTGC	3 cut(s)	57, 365, 493
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	6 cut(s)	12, 51, 145, 205, 260, 580
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	2 cut(s)	126, 254
DpnI	GATC	3 cut(s)	99, 264, 390
DpnII	GATC	3 cut(s)	97, 262, 388
EaeI	YGGCCR	1 cut(s)	668
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	595
Eco32I	GATATC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	728
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
FaqI	GGGAC	2 cut(s)	193, 488
FatI	CATG	6 cut(s)	11, 50, 144, 204, 259, 579
FauNDI	CATATG	1 cut(s)	542
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	4 cut(s)	29, 77, 288, 294
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	570
HaeIII	GGCC	3 cut(s)	322, 670, 741
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	350, 599, 608, 676, 762
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	6, 104
Hpy188I	TCNGA	6 cut(s)	176, 336, 513, 550, 622, 767
Hpy188III	TCNNGA	2 cut(s)	77, 392
Hpy8I	GTNNAC	2 cut(s)	6, 104
HpyAV	CCTTC	4 cut(s)	31, 452, 515, 752
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	6, 66, 360, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 566
HpyF3I	CTNAG	2 cut(s)	126, 254
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	97, 262, 388
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	1 cut(s)	556
MaeI	CTAG	4 cut(s)	29, 77, 288, 294
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	3 cut(s)	99, 264, 390
MboI	GATC	3 cut(s)	97, 262, 388
MboII	GAAGA	7 cut(s)	46, 258, 359, 398, 431, 526, 713
MhlI	GDGCHC	2 cut(s)	8, 723
MluCI	AATT	3 cut(s)	226, 300, 466
MlyI	GAGTC	2 cut(s)	602, 685
MnlI	CCTC	5 cut(s)	84, 135, 223, 493, 580
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	2 cut(s)	319, 672
Mva1269I	GAATGC	2 cut(s)	428, 644
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	477, 566
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	542
NdeII	GATC	3 cut(s)	97, 262, 388
NlaIII	CATG	6 cut(s)	15, 54, 148, 208, 263, 583
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	2 cut(s)	230, 432
PceI	AGGCCT	1 cut(s)	741
PciI	ACATGT	1 cut(s)	204
PciSI	GCTCTTC	1 cut(s)	696
PctI	GAATGC	2 cut(s)	428, 644
PfeI	GAWTC	3 cut(s)	350, 599, 762
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	2 cut(s)	602, 684
PpsI	GAGTC	2 cut(s)	602, 684
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	622
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	3 cut(s)	97, 262, 388
Sau96I	GGNCC	1 cut(s)	622
ScaI	AGTACT	1 cut(s)	292
SchI	GAGTC	2 cut(s)	602, 685
ScrFI	CCNGG	2 cut(s)	319, 672
SduI	GDGCHC	2 cut(s)	8, 723
SfcI	CTRYAG	1 cut(s)	358
SfuI	TTCGAA	2 cut(s)	230, 432
SinI	GGWCC	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	496, 712
SmoI	CTYRAG	2 cut(s)	496, 712
SpeI	ACTAGT	2 cut(s)	287, 293
Sse9I	AATT	3 cut(s)	226, 300, 466
SseBI	AGGCCT	1 cut(s)	741
SspMI	CTAG	4 cut(s)	29, 77, 288, 294
StuI	AGGCCT	1 cut(s)	741
StyD4I	CCNGG	2 cut(s)	317, 670
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	5 cut(s)	156, 230, 244, 328, 432
TasI	AATT	3 cut(s)	226, 300, 466
TatI	WGTACW	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	350, 599, 762
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	346, 758
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	605
TspDTI	ATGAA	4 cut(s)	39, 99, 360, 534
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	346, 758
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	1 cut(s)	226
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	4 cut(s)	29, 77, 288, 294
ZrmI	AGTACT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.