Rh7DG060500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013369
Physical Location & Seq
Forward (+)
4668983 .. 4669366
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG060500.1

Sequence Viewer

Length: 384 bp
ATGCCTTGCGTTTTCCATGGCCTCATTACTATAGCTCCTTCTGGTTCATCTTACATCTCCCAATTCGATCGCGATGGTAGCAATGGAGAACCCAAGTTACTCCCAGCCGACGATGATTGCGGCTATGGAGACAATGAAAAACTCTTCAAGGAACCCTCATTACATGAGCATGAGTTTGATGTTCGTTGCCGCACTCTGGATTTGTTCGGAGTTTCTGATCATGGTCACCTGGGGTTTGCGAGAAATTCTTTGGATAGATATATGATATTTGTATTTCTGGTTATGGGCAATTGTTATGCCCATTTATTCTCAAGGATGCACTCAATATCCATGTTACAGCAACATTTTAGAATTTTCTTTGCCAAACTTGTTATTGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.52

Weight (kDa)

5.83

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013369)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60880 AT5G60880
fragaria_vesca FvH4_5g13402
malus_domestica MD14G1216500.v1.1
prunus_persica Prupe.5G209900_v2.0.a1
pyrus_communis pycom06g18340 pycom14g17930
rosa_laevigata RLG00000005029 RLG00000005030
rosa_multiflora Rmu_sc0003610.1_g000028
rosa_roxburghii Rroxscaffold_3G00270300
rosa_rugosa Rorug06G0459600
rosa_samantha Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana Rw7G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 120, 190
AcsI RAATTY 3 cut(s) 244, 351, 378
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 148, 377
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 1 cut(s) 19
ApoI RAATTY 3 cut(s) 244, 351, 378
AsuHPI GGTGA 1 cut(s) 218
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 230
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 121, 190
BlsI GCNGC 2 cut(s) 122, 191
Bme1390I CCNGG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 16, 229
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 16, 229
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 67, 217
Bsp19I CCATGG 1 cut(s) 16
Bsp68I TCGCGA 1 cut(s) 72
BspACI CCGC 2 cut(s) 120, 190
BspANI GGCC 1 cut(s) 21
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 16, 229
BssMI GATC 2 cut(s) 67, 217
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 16
BstEII GGTNACC 1 cut(s) 224
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 2 cut(s) 70, 220
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 67, 217
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 230
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 30
BstUI CGCG 1 cut(s) 72
BsuRI GGCC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 321
BtuMI TCGCGA 1 cut(s) 72
CviAII CATG 5 cut(s) 17, 164, 170, 221, 331
CviJI RGCY 4 cut(s) 21, 35, 107, 123
CviKI_1 RGCY 4 cut(s) 21, 35, 107, 123
DpnI GATC 2 cut(s) 69, 219
DpnII GATC 2 cut(s) 67, 217
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 16
Eco91I GGTNACC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 5 cut(s) 20, 167, 173, 224, 334
FatI CATG 5 cut(s) 16, 163, 169, 220, 330
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 121, 190
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 2 cut(s) 121, 190
GluI GCNGC 2 cut(s) 121, 190
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 5 cut(s) 20, 167, 173, 224, 334
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 209, 217
Hpy188III TCNNGA 2 cut(s) 71, 197
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
Hsp92II CATG 5 cut(s) 20, 167, 173, 224, 334
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 67, 217
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 6 cut(s) 27, 117, 182, 215, 242, 263
LweI GCATC 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 96, 224, 333
MalI GATC 2 cut(s) 69, 219
MboI GATC 2 cut(s) 67, 217
MboII GAAGA 1 cut(s) 136
MfeI CAATTG 1 cut(s) 289
MluCI AATT 5 cut(s) 62, 244, 289, 351, 378
MnlI CCTC 2 cut(s) 32, 166
MslI CAYNNNNRTG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 78
NcoI CCATGG 1 cut(s) 16
NdeII GATC 2 cut(s) 67, 217
NlaIII CATG 5 cut(s) 20, 167, 173, 224, 334
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 224
NruI TCGCGA 1 cut(s) 72
PkrI GCNGC 2 cut(s) 122, 191
Ple19I CGATCG 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 228
PspEI GGTNACC 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 153
PsrI GAACNNNNNNTAC 4 cut(s) 81, 113, 144, 176
PvuI CGATCG 1 cut(s) 70
RruI TCGCGA 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 168
SatI GCNGC 2 cut(s) 121, 190
Sau3AI GATC 2 cut(s) 67, 217
ScrFI CCNGG 1 cut(s) 230
SetI ASST 2 cut(s) 37, 231
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 5 cut(s) 62, 244, 289, 351, 378
SsiI CCGC 2 cut(s) 120, 190
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 16
TaqI TCGA 1 cut(s) 66
TasI AATT 5 cut(s) 62, 244, 289, 351, 378
TauI GCSGC 2 cut(s) 123, 192
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 36, 150
XapI RAATTY 3 cut(s) 244, 351, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.