Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013369

Physical Location & Seq

Genomic Coordinates Forward (+)

16701345 .. 16703047

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G209900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATCACGCCATGGACAATGACAAGGCTAGTGAGATGGCGTGTGAAGGACTGGGCTTCATGTTTCTTGGCTTGCAGGTTTTCTTTAGATGATAAAGCAGCTGATAGATGTTGTCCTGCAACCCCCCAACTACCAATAAGAAACATGGCTTTCGATATGCAGGATGACAGCAGATGCAATGAGACAAATACGAAAAAGATGTCAAGGCACAAAAAATGCAGCCGAGAACGACGATTAAGCCACAGTTCGCAACAGGTTAAAGGCACTTGCCCAGTTGAAAGTAGGAGTTCCAATAACTCAAGATGCAGGCCACATTTTTCAGACGAAGAATTTATAGTATTCTGCTTTAAAGAAGATGGAGCATTCGACGTCGTGAAAAATGGAAAACCGGAAGCCGCCAGTAGTATAGACTGCACGTCAAGAAACTCACCAAGGCCTGTGAATCGCAAGGATGAGGAAGAAGAAGAGGAGAATTACTTGGGTACAGAACCACATCCTGGTAGCATTGCTGAGGATTGTAGGATGGTGTCCGTTGAATCAAGTGATTCTAATCAATCCGACGGCAGTACAGGCTCTTTTGCTTTTCCAGTGTTGGGTTTGGAGTGGACGGGCAGTCCCGTGCAAATGCCAAAGTCAGAAGCTCTGGAATTAAGAAAGCACAAGGCTCGCTGTATAGGCTTTCAGTTTCAGTGCTGTAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007275 GO:0008150 GO:0008356 GO:0009653 GO:0009786 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010374 GO:0016020 GO:0016043 GO:0016049 GO:0019897 GO:0019898 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051301 GO:0051302 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.62

Weight (kDa)

7.46

Isoelectric Point (pI)

63.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60880 AT5G60880
fragaria_vesca	FvH4_5g13402
malus_domestica	MD14G1216500.v1.1
prunus_persica	Prupe.5G209900_v2.0.a1
pyrus_communis	pycom06g18340 pycom14g17930
rosa_laevigata	RLG00000005029 RLG00000005030
rosa_multiflora	Rmu_sc0003610.1_g000028
rosa_roxburghii	Rroxscaffold_3G00270300
rosa_rugosa	Rorug06G0459600
rosa_samantha	Rh7AG060300 Rh7AG060400 Rh7CG062100 Rh7DG060400 Rh7DG060500
rosa_wichuraiana	Rw7G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	497
AciI	CCGC	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	2 cut(s)	484, 568
AfiI	CCNNNNNNNGG	2 cut(s)	497, 593
AgsI	TTSAA	2 cut(s)	278, 536
AhdI	GACNNNNNGTC	2 cut(s)	415, 612
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	2 cut(s)	101, 641
AluI	AGCT	2 cut(s)	101, 641
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	308, 434
ApeKI	GCWGC	2 cut(s)	98, 219
ApoI	RAATTY	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsuHPI	GGTGA	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	110, 231
BccI	CCATC	3 cut(s)	30, 350, 517
BceAI	ACGGC	1 cut(s)	577
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	694
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	3 cut(s)	99, 220, 396
BlsI	GCNGC	3 cut(s)	100, 221, 397
Bme1390I	CCNGG	1 cut(s)	498
BmeRI	GACNNNNNGTC	2 cut(s)	415, 612
BmgBI	CACGTC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	2 cut(s)	61, 266
BmsI	GCATC	2 cut(s)	164, 293
BmuI	ACTGGG	2 cut(s)	61, 266
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	11, 431
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 593
Bse1I	ACTGG	4 cut(s)	56, 272, 399, 587
Bse3DI	GCAATG	2 cut(s)	184, 504
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	11, 431
BseGI	GGATG	4 cut(s)	169, 457, 493, 528
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	497, 593
BseMI	GCAATG	2 cut(s)	184, 504
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	4 cut(s)	56, 272, 399, 587
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	110, 231
BsgI	GTGCAG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	310, 436
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	497, 593
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	600
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	310, 436
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	310, 436
BspCNI	CTCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	184, 504
BsrI	ACTGG	4 cut(s)	56, 272, 399, 587
BssECI	CCNNGG	2 cut(s)	11, 431
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	11, 431
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	369
BstC8I	GCNNGC	3 cut(s)	73, 308, 667
BstDEI	CTNAG	1 cut(s)	510
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	4 cut(s)	169, 457, 493, 528
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	570, 675
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	110, 231
BsuRI	GGCC	2 cut(s)	310, 436
BtgI	CCRYGG	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	4 cut(s)	169, 457, 493, 528
BtsIMutI	CAGTG	2 cut(s)	594, 695
BveI	ACCTGC	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	73, 308, 667
Csp6I	GTAC	2 cut(s)	483, 567
CviAII	CATG	3 cut(s)	12, 60, 145
CviQI	GTAC	2 cut(s)	483, 567
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	349
DriI	GACNNNNNGTC	2 cut(s)	415, 612
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	2 cut(s)	415, 612
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	2 cut(s)	11, 431
Eco147I	AGGCCT	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	11, 431
ErhI	CCWWGG	2 cut(s)	11, 431
FaeI	CATG	3 cut(s)	15, 63, 148
FaiI	YATR	7 cut(s)	13, 61, 146, 158, 335, 407, 674
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	3 cut(s)	11, 59, 144
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	99, 220, 396
FokI	GGATG	4 cut(s)	176, 464, 480, 535
Fsp4HI	GCNGC	3 cut(s)	99, 220, 396
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	3 cut(s)	99, 220, 396
HaeIII	GGCC	2 cut(s)	310, 436
HapII	CCGG	1 cut(s)	389
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	15, 63, 148
HinfI	GANTC	4 cut(s)	442, 536, 545, 699
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	420
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	4 cut(s)	322, 559, 637, 704
Hpy188III	TCNNGA	4 cut(s)	300, 373, 420, 644
Hpy8I	GTNNAC	1 cut(s)	606
Hpy99I	CGWCG	4 cut(s)	234, 371, 374, 563
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	2 cut(s)	369, 416
HpyCH4V	TGCA	8 cut(s)	75, 119, 160, 177, 219, 306, 414, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	570, 675
HpyF3I	CTNAG	1 cut(s)	510
HpySE526I	ACGT	2 cut(s)	369, 416
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	15, 63, 148
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	2 cut(s)	110, 231
LweI	GCATC	2 cut(s)	164, 293
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	2 cut(s)	369, 416
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	338, 365, 470, 473, 476
MluCI	AATT	3 cut(s)	329, 472, 647
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	3 cut(s)	448, 460, 505
MseI	TTAA	4 cut(s)	236, 258, 348, 650
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	570, 675
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	15, 63, 148
NmeAIII	GCCGAG	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	4 cut(s)	442, 536, 545, 699
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	3 cut(s)	100, 221, 397
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	484, 568
RsaNI	GTAC	2 cut(s)	483, 567
SaqAI	TTAA	4 cut(s)	236, 258, 348, 650
SatI	GCNGC	3 cut(s)	99, 220, 396
Sau3AI	GATC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	6 cut(s)	80, 103, 258, 372, 419, 643
SfaNI	GCATC	2 cut(s)	164, 293
SfcI	CTRYAG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	3 cut(s)	329, 472, 647
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	2 cut(s)	11, 431
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	2 cut(s)	372, 419
TaqI	TCGA	2 cut(s)	153, 366
TasI	AATT	3 cut(s)	329, 472, 647
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	4 cut(s)	442, 536, 545, 699
Tru1I	TTAA	4 cut(s)	236, 258, 348, 650
Tru9I	TTAA	4 cut(s)	236, 258, 348, 650
TscAI	CASTG	2 cut(s)	594, 695
TseI	GCWGC	2 cut(s)	98, 219
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	2 cut(s)	594, 695
Van91I	CCANNNNNTGG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	329
XspI	CTAG	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.